Squidpy: a scalable framework for spatial omics analysisGiovanni Palla, Fabian J. Theis, Hannah Spitzer et al.|Nature Methods|2022Cited by 1.1k
Programs, origins and immunomodulatory functions of myeloid cells in gliomaTyler E. Miller, B Bernstein, Yuzhou Evelyn Tong et al.|Nature|2025Cited by 107
Squidpy: a scalable framework for spatial single cell analysisGiovanni Palla, Fabian J. Theis, Hannah Spitzer et al.|bioRxiv (Cold Spring Harbor Laboratory)|2021Cited by 71
Modeling fragment counts improves single-cell ATAC-seq analysisLaura D. Martens, Julien Gagneur, David S. Fischer et al.|Nature Methods|2023Cited by 66
Single-cell RNA sequencing reveals ex vivo signatures of SARS-CoV-2-reactive T cells through ‘reverse phenotyping’David S. Fischer, Kilian Schober|Nature Communications|2021Cited by 39