Modeling fragment counts improves single-cell ATAC-seq analysis
Laura D. Martens(Helmholtz Association of German Research Centres), Julien Gagneur(Helmholtz Zentrum München), David S. Fischer(Broad Institute), Fabian J. Theis(Helmholtz Zentrum München), Vicente A. Yépez(Technical University of Munich)
Cited by 66
Related Papers
PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells
|Genome biology|2019|1.8k
Single-cell RNA-seq denoising using a deep count autoencoder
|Nature Communications|2019|1.1k
Squidpy: a scalable framework for spatial omics analysis
|Nature Methods|2022|1.1k
Best practices for single-cell analysis across modalities
|Nature Reviews Genetics|2023|1k