MMSplice: modular modeling improves the predictions of genetic variant effects on splicingJun Cheng, Julien Gagneur, Thi Yen Duong Nguyen et al.|Genome biology|2019Cited by 268
The Kipoi repository accelerates community exchange and reuse of predictive models for genomicsŽiga Avsec, Julien Gagneur, Roman Kreuzhuber et al.|Nature Biotechnology|2019Cited by 175
<i>Cis</i> -regulatory elements explain most of the mRNA stability variation across genes in yeastJun Cheng, Julien Gagneur, Kerstin C. Maier et al.|RNA|2017Cited by 94
Epicardioid single-cell genomics uncovers principles of human epicardium biology in heart development and diseaseAnna B. Meier, Alessandra Moretti, Dorota Zawada et al.|Nature Biotechnology|2023Cited by 84
Modeling fragment counts improves single-cell ATAC-seq analysisLaura D. Martens, Julien Gagneur, David S. Fischer et al.|Nature Methods|2023Cited by 66