SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across TissuesCarly G.K. Ziegler, Fabian J. Theis, Samuel J. Allon et al.|Cell|2020Cited by 2.5k
PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cellsF. Alexander Wolf, Fabian J. Theis|Genome biology|2019Cited by 1.8k
Single-cell RNA-seq denoising using a deep count autoencoderGökçen Eraslan, Fabian J. Theis|Nature Communications|2019Cited by 1.1k
Squidpy: a scalable framework for spatial omics analysisGiovanni Palla, Fabian J. Theis, Hannah Spitzer et al.|Nature Methods|2022Cited by 1.1k
Best practices for single-cell analysis across modalitiesLukas Heumos, Fabian J. Theis, Anna C. Schaar et al.|Nature Reviews Genetics|2023Cited by 1k