How to build the virtual cell with artificial intelligence: Priorities and opportunities

Charlotte Bunne(Chan Zuckerberg Initiative (United States)), Yusuf Roohani(Chan Zuckerberg Initiative (United States)), Yanay Rosen(Chan Zuckerberg Initiative (United States)), Ankit Gupta(Chan Zuckerberg Initiative (United States)), Xikun Zhang(Chan Zuckerberg Initiative (United States)), Marcel Roed(Chan Zuckerberg Initiative (United States)), Theodore Alexandrov(University of San Diego), Mohammed AlQuraishi(University of California San Diego), Patrícia Flatley Brennan(Chan Zuckerberg Initiative (United States)), Daniel B. Burkhardt(Somerville Hospital), Andrea Califano(Columbia University Irving Medical Center), Jonah Cool(Chan Zuckerberg Initiative (United States)), Abby F. Dernburg(University of California, Berkeley), Kirsty Ewing(Chan Zuckerberg Initiative (United States)), Emily B. Fox(Chan Zuckerberg Initiative (United States)), Matthias Haury(Chan Zuckerberg Initiative (United States)), Amy E. Herr(Chan Zuckerberg Initiative (United States)), Eric Horvitz(Microsoft (United States)), Patrick D. Hsu(Palo Alto Institute), Viren Jain(Google (United States)), Gregory R. Johnson(XLIM), Thomas Kalil(Futures Group (United States)), David R. Kelley(Enzo Life Sciences (United States)), Shana O. Kelley(Northwestern University), Anna Kreshuk(European Molecular Biology Laboratory), Tim Mitchison(Harvard University), Stephani Otte(Chan Zuckerberg Initiative (United States)), Jay Shendure(Howard Hughes Medical Institute), Nicholas Sofroniew(Evolutionary Genomics (United States)), Fabian J. Theis(Helmholtz Zentrum München), Christina V. Theodoris(Gladstone Institutes), Srigokul Upadhyayula(Lawrence Berkeley National Laboratory), M. Valer(Chan Zuckerberg Initiative (United States)), Bo Wang(University of Toronto), Eric P. Xing(Mohamed bin Zayed University of Artificial Intelligence), Serena Yeung-Levy(Stanford University), Marinka Žitnik(Broad Institute), Theofanis Karaletsos(Chan Zuckerberg Initiative (United States)), Aviv Regev(HES-SO Genève), Emma Lundberg(Chan Zuckerberg Initiative (United States)), Jure Leskovec(Chan Zuckerberg Initiative (United States)), Stephen R. Quake(Chan Zuckerberg Initiative (United States))
Cell
December 1, 2024
Cited by 262Open Access
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Abstract

Cells are essential to understanding health and disease, yet traditional models fall short of modeling and simulating their function and behavior. Advances in AI and omics offer groundbreaking opportunities to create an AI virtual cell (AIVC), a multi-scale, multi-modal large-neural-network-based model that can represent and simulate the behavior of molecules, cells, and tissues across diverse states. This Perspective provides a vision on their design and how collaborative efforts to build AIVCs will transform biological research by allowing high-fidelity simulations, accelerating discoveries, and guiding experimental studies, offering new opportunities for understanding cellular functions and fostering interdisciplinary collaborations in open science.


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