Phylogenomic analyses provide insights into primate evolution

Yong Shao(Kunming Institute of Zoology), Long Zhou(Women's Hospital, School of Medicine, Zhejiang University), Li Fang(Ningbo University), Lan Zhao(Northwest University), Baolin Zhang(Kunming Institute of Zoology), Feng Shao(Southwest University), Jiawei Chen(BGI Group (China)), Chunyan Chen(Northwestern Polytechnical University), Xupeng Bi(Women's Hospital, School of Medicine, Zhejiang University), Xiao-Lin Zhuang(Kunming Institute of Zoology), Hongliang Zhu(BGI Group (China)), Jiang Hu(Bioscience (China)), Zongyi Sun(Bioscience (China)), Xin Li(Bioscience (China)), Depeng Wang(Bioscience (China)), Iker Rivas-González(Aarhus University), Sheng Wang(Kunming Institute of Zoology), Yun-Mei Wang(Kunming Institute of Zoology), Wu Chen(Guangzhou Zoo), Gang Li(Shaanxi Normal University), Hui‐Meng Lu(Northwestern Polytechnical University), Yang Liu(Shaanxi Normal University), Lukas F. K. Kuderna(Illumina (United States)), Kyle Kai‐How Farh(Illumina (United States)), Pengfei Fan(Sun Yat-sen University), Li Yu(Yunnan University), Ming Li(Chinese Academy of Sciences), Zhijin Liu(Capital Normal University), George P. Tiley(Duke University), Anne D. Yoder(Duke University), Christian Roos(German Primate Center), Takashi Hayakawa(Hokkaido University), Tomàs Marquès‐Bonet(Institució Catalana de Recerca i Estudis Avançats), Jeffrey Rogers(Baylor College of Medicine), Peter D. Stenson(Cardiff University), D.N. Cooper(Cardiff University), Mikkel Heide Schierup(Aarhus University), Yong‐Gang Yao(Kunming Institute of Zoology), Ya‐Ping Zhang(Kunming Institute of Zoology), Wen Wang(Northwestern Polytechnical University), Xiao‐Guang Qi(Northwest University), Guojie Zhang(University of Copenhagen), Dong‐Dong Wu(Kunming Institute of Zoology)
Science
June 1, 2023
Cited by 166Open Access
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Abstract

Comparative analysis of primate genomes within a phylogenetic context is essential for understanding the evolution of human genetic architecture and primate diversity. We present such a study of 50 primate species spanning 38 genera and 14 families, including 27 genomes first reported here, with many from previously less well represented groups, the New World monkeys and the Strepsirrhini. Our analyses reveal heterogeneous rates of genomic rearrangement and gene evolution across primate lineages. Thousands of genes under positive selection in different lineages play roles in the nervous, skeletal, and digestive systems and may have contributed to primate innovations and adaptations. Our study reveals that many key genomic innovations occurred in the Simiiformes ancestral node and may have had an impact on the adaptive radiation of the Simiiformes and human evolution.


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