Bakta: rapid and standardized annotation of bacterial genomes via alignment-free sequence identificationOliver Schwengers, Alexander Goesmann, Lukas Jelonek et al.|Microbial Genomics|2021Cited by 1.4k
Platon: identification and characterization of bacterial plasmid contigs in short-read draft assemblies exploiting protein sequence-based replicon distribution scoresOliver Schwengers, Alexander Goesmann, Patrick Barth et al.|Microbial Genomics|2020Cited by 219
Prediction of antimicrobial resistance based on whole-genome sequencing and machine learningYunxiao Ren, Dominik Heider, Trinad Chakraborty et al.|Bioinformatics|2021Cited by 211
Detection and Characterization of ESBL-Producing Escherichia coli From Humans and Poultry in GhanaLinda Falgenhauer, Daniel Eibach, Can Imirzalioglu et al.|Frontiers in Microbiology|2019Cited by 170
ASA3P: An automatic and scalable pipeline for the assembly, annotation and higher-level analysis of closely related bacterial isolatesOliver Schwengers, Alexander Goesmann, Andreas Hoek et al.|PLoS Computational Biology|2020Cited by 101