Effect of tokenization on transformers for biological sequencesEdo Dotan, Yonatan Belinkov, Gal Jaschek et al.|Bioinformatics|2024Cited by 39
Natural language processing approach to model the secretion signal of type III effectorsNaama Wagner, Tal Pupko, Michael Alburquerque et al.|Frontiers in Plant Science|2022Cited by 11
M1CR0B1AL1Z3R 2.0: an enhanced web server for comparative analysis of bacterial genomes at scaleYair Shimony, Tal Pupko, Edo Dotan et al.|Nucleic Acids Research|2025Cited by 8
GenomeFLTR: filtering reads made easyEdo Dotan, Tal Pupko, Michael Alburquerque et al.|Nucleic Acids Research|2023Cited by 6
BetaAlign: a deep learning approach for multiple sequence alignmentEdo Dotan, Tal Pupko, Elya Wygoda et al.|Bioinformatics|2024Cited by 5