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Bruno Aranda

SIB Swiss Institute of Bioinformatics

Publishes on Biomedical Text Mining and Ontologies, Bioinformatics and Genomic Networks, Computational Drug Discovery Methods. 20 papers and 6.1k citations.

20Publications
6.1kTotal Citations

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Top publicationsby citations

The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases
Sandra Orchard, Mais Ammari, Bruno Aranda et al.|Nucleic Acids Research|2013
Cited by 2kOpen Access

IntAct (freely available at http://www.ebi.ac.uk/intact) is an open-source, open data molecular interaction database populated by data either curated from the literature or from direct data depositions. IntAct has developed a sophisticated web-based curation tool, capable of supporting both IMEx- and MIMIx-level curation. This tool is now utilized by multiple additional curation teams, all of whom annotate data directly into the IntAct database. Members of the IntAct team supply appropriate levels of training, perform quality control on entries and take responsibility for long-term data maintenance. Recently, the MINT and IntAct databases decided to merge their separate efforts to make optimal use of limited developer resources and maximize the curation output. All data manually curated by the MINT curators have been moved into the IntAct database at EMBL-EBI and are merged with the existing IntAct dataset. Both IntAct and MINT are active contributors to the IMEx consortium (http://www.imexconsortium.org).

The IntAct molecular interaction database in 2012
Samuel Kerrien, Bruno Aranda, Lionel Breuza et al.|Nucleic Acids Research|2011
Cited by 1.2kOpen Access

IntAct is an open-source, open data molecular interaction database populated by data either curated from the literature or from direct data depositions. Two levels of curation are now available within the database, with both IMEx-level annotation and less detailed MIMIx-compatible entries currently supported. As from September 2011, IntAct contains approximately 275 000 curated binary interaction evidences from over 5000 publications. The IntAct website has been improved to enhance the search process and in particular the graphical display of the results. New data download formats are also available, which will facilitate the inclusion of IntAct's data in the Semantic Web. IntAct is an active contributor to the IMEx consortium (http://www .imexconsortium.org). IntAct

IntAct--open source resource for molecular interaction data
Samuel Kerrien, Yasmin Alam-Faruque, Bruno Aranda et al.|Nucleic Acids Research|2006
Cited by 806Open Access

IntAct is an open source database and software suite for modeling, storing and analyzing molecular interaction data. The data available in the database originates entirely from published literature and is manually annotated by expert biologists to a high level of detail, including experimental methods, conditions and interacting domains. The database features over 126,000 binary interactions extracted from over 2100 scientific publications and makes extensive use of controlled vocabularies. The web site provides tools allowing users to search, visualize and download data from the repository. IntAct supports and encourages local installations as well as direct data submission and curation collaborations. IntAct source code and data are freely available from http://www.ebi.ac.uk/intact.

The IntAct molecular interaction database in 2010
Bruno Aranda, Premanand Achuthan, Yasmin Alam-Faruque et al.|Nucleic Acids Research|2009
Cited by 629Open Access

IntAct is an open-source, open data molecular interaction database and toolkit. Data is abstracted from the literature or from direct data depositions by expert curators following a deep annotation model providing a high level of detail. As of September 2009, IntAct contains over 200.000 curated binary interaction evidences. In response to the growing data volume and user requests, IntAct now provides a two-tiered view of the interaction data. The search interface allows the user to iteratively develop complex queries, exploiting the detailed annotation with hierarchical controlled vocabularies. Results are provided at any stage in a simplified, tabular view. Specialized views then allows 'zooming in' on the full annotation of interactions, interactors and their properties. IntAct source code and data are freely available at http://www.ebi.ac.uk/intact.