Lysosome-dependent nutrient scavenging underlies stress adaptation during epithelial-to-mesenchymal transition

Michal J. Nagiec(Cornell University), Paola Cavaliere(Cornell University), Friederike Dündar(Cornell University), David Spencer(Cornell University), Nikos Koundouros(Cornell University), Joana B. Nunes(Cornell University), Sejeong Shin(Cornell University), Sang-Oh Yoon(Cornell University), Julie Han(Cornell University), Andre Chavez(Cornell University), Olivia M. Kester(Cornell University), Rabia Khan(Cornell University), Paul Zumbo(Cornell University), Eric E. Gardner(Cornell University), Bobak Parang(Cornell University), Anders P. Mutvei(Cornell University), John M. Asara(Beth Israel Deaconess Medical Center), Steven P. Gygi(Harvard University), Doron Betel(Cornell University), Noah Dephoure(Cornell University), John Blenis(Cornell University)
bioRxiv (Cold Spring Harbor Laboratory)
September 23, 2025
Cited by 0Open Access
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Abstract

Metastatic cancer cells invade tissue, overcome nutrient stress, and survive transit to distant sites. Many of the mechanisms that support these processes are incompatible with proliferation. This study defines cellular transition states in breast epithelial cells undergoing epithelial-mesenchymal transition (EMT) driven by ERK2 and TGF-β signaling. EMT triggers robust endolysosomal system upregulation and metabolic adaptations that balance proliferative and invasive states. Surprisingly, invasive cells rely on scavenging via lysosomes and macropinocytosis to acquire amino acids, rather than plasma membrane transport, even in nutrient-rich conditions. Macropinocytosis increases intracellular amino acid storage, promoting survival during amino acid deprivation. This metabolic shift depends on c-MYC downregulation, an early EMT event. Reintroducing c-MYC suppresses the metabolic switch, endolysosomal induction, macropinocytosis, and the proliferation-to-migration transition. These findings reveal how cells dynamically balance proliferation and invasion, offering insights into transition states difficult to capture in models of breast cancer metastasis.


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