Standards for plant synthetic biology: a common syntax for exchange of <scp>DNA</scp> parts

Nicola J. Patron(John Innes Centre), Diego Orzáez(Consejo Superior de Investigaciones Científicas), Sylvestre Marillonnet(Leibniz Institute of Plant Biochemistry), Heribert Warzecha(Technische Universität Darmstadt), Colette Matthewman(John Innes Centre), Mark Youles(Norwich Research Park), Oleg Raitskin(John Innes Centre), Aymeric Leveau(John Innes Centre), Gemma Farré(John Innes Centre), Christian Rogers(John Innes Centre), Alison G. Smith(John Innes Centre), Julian M. Hibberd(John Innes Centre), Alex Webb(John Innes Centre), James Locke(John Innes Centre), Sebastian Schornack(John Innes Centre), Jim W. Ajioka(John Innes Centre), David C. Baulcombe(John Innes Centre), Cyril Zipfel(Norwich Research Park), Sophien Kamoun(Norwich Research Park), Jonathan D. G. Jones(Norwich Research Park), Hannah Kuhn(Norwich Research Park), Silke Robatzek(Norwich Research Park), H. Peter van Esse(Norwich Research Park), Dale Sanders(John Innes Centre), Giles Oldroyd(John Innes Centre), Cathie Martin(John Innes Centre), Robert A. Field(John Innes Centre), Sarah E. O’Connor(John Innes Centre), Samantha Fox(John Innes Centre), Brande B. H. Wulff(John Innes Centre), J. Benjamin Miller(John Innes Centre), Andy Breakspear(John Innes Centre), Guru Radhakrishnan(John Innes Centre), Pierre‐Marc Delaux(John Innes Centre), Dominique Loqué(Lawrence Berkeley National Laboratory), Antonio Granell(Consejo Superior de Investigaciones Científicas), Alain Tissier(Leibniz Institute of Plant Biochemistry), Patrick M. Shih(Lawrence Berkeley National Laboratory), Thomas P. Brutnell(Donald Danforth Plant Science Center), W. Paul Quick(University of Sheffield), Heiko Rischer(VTT Technical Research Centre of Finland), Paul D. Fraser(Royal Holloway University of London), Asaph Aharoni(Weizmann Institute of Science), Christine A. Raines(University of Essex), Paul F. South(United States Department of Agriculture), Jean‐Michel Ané(University of Wisconsin–Madison), Björn Hamberger(University of Copenhagen), Jane A. Langdale(University of Oxford), Jens Stougaard(Aarhus University), Harro J. Bouwmeester(Wageningen University & Research), Michael K. Udvardi(Noble Research Institute), J. A. H. Murray(Cardiff University), Vardis Ntoukakis(University of Warwick), Patrick Schäfer(University of Warwick), Katherine Denby(University of Warwick), Keith J. Edwards(University of Bristol), Anne Osbourn(John Innes Centre), Jim Haseloff(John Innes Centre)
New Phytologist
July 14, 2015
Cited by 304Open Access
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Abstract

Inventors in the field of mechanical and electronic engineering can access multitudes of components and, thanks to standardization, parts from different manufacturers can be used in combination with each other. The introduction of BioBrick standards for the assembly of characterized DNA sequences was a landmark in microbial engineering, shaping the field of synthetic biology. Here, we describe a standard for Type IIS restriction endonuclease-mediated assembly, defining a common syntax of 12 fusion sites to enable the facile assembly of eukaryotic transcriptional units. This standard has been developed and agreed by representatives and leaders of the international plant science and synthetic biology communities, including inventors, developers and adopters of Type IIS cloning methods. Our vision is of an extensive catalogue of standardized, characterized DNA parts that will accelerate plant bioengineering.


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