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Yuan Yuan Ling

Jinzhou Medical University

Publishes on Melanoma and MAPK Pathways, Synthesis and biological activity, Cancer Mechanisms and Therapy. 30 papers and 4.5k citations.

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The Achilles’ heel of senescent cells: from transcriptome to senolytic drugs
Yi Zhu, Tamar Tchkonia, Tamar Pirtskhalava et al.|Aging Cell|2015
Cited by 2.4kOpen Access

The healthspan of mice is enhanced by killing senescent cells using a transgenic suicide gene. Achieving the same using small molecules would have a tremendous impact on quality of life and the burden of age-related chronic diseases. Here, we describe the rationale for identification and validation of a new class of drugs termed senolytics, which selectively kill senescent cells. By transcript analysis, we discovered increased expression of pro-survival networks in senescent cells, consistent with their established resistance to apoptosis. Using siRNA to silence expression of key nodes of this network, including ephrins (EFNB1 or 3), PI3Kδ, p21, BCL-xL, or plasminogen-activated inhibitor-2, killed senescent cells, but not proliferating or quiescent, differentiated cells. Drugs targeting these same factors selectively killed senescent cells. Dasatinib eliminated senescent human fat cell progenitors, while quercetin was more effective against senescent human endothelial cells and mouse BM-MSCs. The combination of dasatinib and quercetin was effective in eliminating senescent MEFs. In vivo, this combination reduced senescent cell burden in chronologically aged, radiation-exposed, and progeroid Ercc1(-/Δ) mice. In old mice, cardiac function and carotid vascular reactivity were improved 5 days after a single dose. Following irradiation of one limb in mice, a single dose led to improved exercise capacity for at least 7 months following drug treatment. Periodic drug administration extended healthspan in Ercc1(-/∆) mice, delaying age-related symptoms and pathology, osteoporosis, and loss of intervertebral disk proteoglycans. These results demonstrate the feasibility of selectively ablating senescent cells and the efficacy of senolytics for alleviating symptoms of frailty and extending healthspan.

Fisetin is a senotherapeutic that extends health and lifespan
Matthew J. Yousefzadeh, Yi Zhu, Sara J. McGowan et al.|EBioMedicine|2018
Cited by 961Open Access

BACKGROUND: Senescence is a tumor suppressor mechanism activated in stressed cells to prevent replication of damaged DNA. Senescent cells have been demonstrated to play a causal role in driving aging and age-related diseases using genetic and pharmacologic approaches. We previously demonstrated that the combination of dasatinib and the flavonoid quercetin is a potent senolytic improving numerous age-related conditions including frailty, osteoporosis and cardiovascular disease. The goal of this study was to identify flavonoids with more potent senolytic activity. METHODS: -luciferase reporter and aged wild-type mice to determine the effects of fisetin on senescence markers, age-related histopathology, disease markers, health span and lifespan. Human adipose tissue explants were used to determine if results translated. FINDINGS: Of the 10 flavonoids tested, fisetin was the most potent senolytic. Acute or intermittent treatment of progeroid and old mice with fisetin reduced senescence markers in multiple tissues, consistent with a hit-and-run senolytic mechanism. Fisetin reduced senescence in a subset of cells in murine and human adipose tissue, demonstrating cell-type specificity. Administration of fisetin to wild-type mice late in life restored tissue homeostasis, reduced age-related pathology, and extended median and maximum lifespan. INTERPRETATION: The natural product fisetin has senotherapeutic activity in mice and in human tissues. Late life intervention was sufficient to yield a potent health benefit. These characteristics suggest the feasibility to translation to human clinical studies. FUND: NIH grants P01 AG043376 (PDR, LJN), U19 AG056278 (PDR, LJN, WLL), R24 AG047115 (WLL), R37 AG013925 (JLK), R21 AG047984 (JLK), P30 DK050456 (Adipocyte Subcore, JLK), a Glenn Foundation/American Federation for Aging Research (AFAR) BIG Award (JLK), Glenn/AFAR (LJN, CEB), the Ted Nash Long Life and Noaber Foundations (JLK), the Connor Group (JLK), Robert J. and Theresa W. Ryan (JLK), and a Minnesota Partnership Grant (AMAY-UMN#99)-P004610401-1 (JLK, EAA).

Identification of HSP90 inhibitors as a novel class of senolytics
Heike Fuhrmann‐Stroissnigg, Yuan Yuan Ling, Jing Zhao et al.|Nature Communications|2017
Cited by 674Open Access

Abstract Aging is the main risk factor for many chronic degenerative diseases and cancer. Increased senescent cell burden in various tissues is a major contributor to aging and age-related diseases. Recently, a new class of drugs termed senolytics were demonstrated to extending healthspan, reducing frailty and improving stem cell function in multiple murine models of aging. To identify novel and more optimal senotherapeutic drugs and combinations, we established a senescence associated β-galactosidase assay as a screening platform to rapidly identify drugs that specifically affect senescent cells. We used primary Ercc1 −/− murine embryonic fibroblasts with reduced DNA repair capacity, which senesce rapidly if grown at atmospheric oxygen. This platform was used to screen a small library of compounds that regulate autophagy, identifying two inhibitors of the HSP90 chaperone family as having significant senolytic activity in mouse and human cells. Treatment of Ercc1 −/∆ mice, a mouse model of a human progeroid syndrome, with the HSP90 inhibitor 17-DMAG extended healthspan, delayed the onset of several age-related symptoms and reduced p16 INK4a expression. These results demonstrate the utility of our screening platform to identify senotherapeutic agents as well as identified HSP90 inhibitors as a promising new class of senolytic drugs.

Structure-Activity Relationships and X-ray Structures Describing the Selectivity of Aminopyrazole Inhibitors for c-Jun N-terminal Kinase 3 (JNK3) over p38
Ted Kamenecka, Jeff E. Habel, Derek R. Duckett et al.|Journal of Biological Chemistry|2009
Cited by 71Open Access

c-Jun N-terminal kinase 3α1 (JNK3α1) is a mitogen-activated protein kinase family member expressed primarily in the brain that phosphorylates protein transcription factors, including c-Jun and activating transcription factor-2 (ATF-2) upon activation by a variety of stress-based stimuli. In this study, we set out to design JNK3-selective inhibitors that had >1000-fold selectivity over p38, another closely related mitogen-activated protein kinase family member. To do this we employed traditional medicinal chemistry principles coupled with structure-based drug design. Inhibitors from the aminopyrazole class, such as SR-3576, were found to be very potent JNK3 inhibitors (IC50 = 7 nm) with >2800-fold selectivity over p38 (p38 IC50 > 20 μm) and had cell-based potency of ∼1 μm. In contrast, indazole-based inhibitors exemplified by SR-3737 were potent inhibitors of both JNK3 (IC50 = 12 nm) and p38 (IC50 = 3 nm). These selectivity differences between the indazole class and the aminopyrazole class came despite nearly identical binding (root mean square deviation = 0.33 Å) of these two compound classes to JNK3. The structural features within the compounds giving rise to the selectivity in the aminopyrazole class include the highly planar nature of the pyrazole, N-linked phenyl structures, which better occupied the smaller active site of JNK3 compared with the larger active site of p38. c-Jun N-terminal kinase 3α1 (JNK3α1) is a mitogen-activated protein kinase family member expressed primarily in the brain that phosphorylates protein transcription factors, including c-Jun and activating transcription factor-2 (ATF-2) upon activation by a variety of stress-based stimuli. In this study, we set out to design JNK3-selective inhibitors that had >1000-fold selectivity over p38, another closely related mitogen-activated protein kinase family member. To do this we employed traditional medicinal chemistry principles coupled with structure-based drug design. Inhibitors from the aminopyrazole class, such as SR-3576, were found to be very potent JNK3 inhibitors (IC50 = 7 nm) with >2800-fold selectivity over p38 (p38 IC50 > 20 μm) and had cell-based potency of ∼1 μm. In contrast, indazole-based inhibitors exemplified by SR-3737 were potent inhibitors of both JNK3 (IC50 = 12 nm) and p38 (IC50 = 3 nm). These selectivity differences between the indazole class and the aminopyrazole class came despite nearly identical binding (root mean square deviation = 0.33 Å) of these two compound classes to JNK3. The structural features within the compounds giving rise to the selectivity in the aminopyrazole class include the highly planar nature of the pyrazole, N-linked phenyl structures, which better occupied the smaller active site of JNK3 compared with the larger active site of p38. Because the initial reports on the discovery of p38 (1Lee J.C. Laydon J.T. McDonnell P.C. Gallagher T.F. Kumar S. Green D. McNulty D. Blumenthal M.J. Keys J.R. Landvatter S.W. Strickler J.E. McLaughlin M.M. Siemens I.R. Fisher S.M. Livi G.P. White J.R. Adams J.L. Young P.R. Nature. 1994; 372: 739-746Crossref PubMed Scopus (3135) Google Scholar) and c-Jun N-terminal kinase (JNK) 2The abbreviations used are: JNK, c-Jun N-terminal kinase; ATF-2, activating transcription factor-2; AMP-PCP, adenosine 5′-(β,γ-methylenetriphosphate); Bis-Tris, 2-[bis(2-hydroxyethyl)amino]-2-(hydroxymethyl)propane-1,3-diol; SAR, structure-activity relationship; r.m.s.d., root mean square deviation. 2The abbreviations used are: JNK, c-Jun N-terminal kinase; ATF-2, activating transcription factor-2; AMP-PCP, adenosine 5′-(β,γ-methylenetriphosphate); Bis-Tris, 2-[bis(2-hydroxyethyl)amino]-2-(hydroxymethyl)propane-1,3-diol; SAR, structure-activity relationship; r.m.s.d., root mean square deviation. (2Derijard B. Hibi M. Wu I.H. Barrett T. Su B. Deng T. Karin M. Davis R.J. 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Kumar S. Kassis S. Doyle M.L. McNulty D. Gallagher T.F. Fisher S. McDonnell P.C. Carr S.A. Huddleston M.J. Seibel G. Porter T.G. Livi G.P. Adams J.L. Lee J.C. J. Biol. Chem. 1997; 272: 12116-12121Abstract Full Text Full Text PDF PubMed Scopus (537) Google Scholar, 17Zhao H. Serby M.D. Xin Z. Szczepankiewicz B.G. Liu M. Kosogof C. Liu B. Nelson L.T. Johnson E.F. Wang S. Pederson T. Gum R.J. Clampit J.E. Haasch D.L. Abad-Zapatero C. Fry E.H. Rondinone C. Trevillyan J.M. Sham H.L. Liu G. J. Med. Chem. 2006; 49: 4455-4458Crossref PubMed Scopus (69) Google and are in the to compounds that are a of that compounds be to clinical The that rise to p38 inhibitors from numerous structural classes has J.E. Liu L. G. S. Wang Z. J.R. E.A. O'Keefe S.J. O'Neill E.A. D.M. D.M. Bioorg. Lett. PubMed Scopus Google Scholar, J. A. Frantz B. O'Neill E.A. G. O'Keefe S.J. Li B. C. de S. A. B. N. Hermes J. P. Biochemistry. PubMed Scopus Google Scholar, K. S. V. M.J. P.R. Su Chem. Biol. 1997; 4: Full Text PDF PubMed Scopus Google Scholar) and is on differences the in p38 in of the and in the mitogen-activated protein kinase family compounds have that of this in p38, compared with and the of the compounds have and which to p38 selectivity D.A. S.M. A. L. K. Frantz B. S.J. M. Lin J. S. O'Neill E.A. M. J. Rolando A. Y. D.M. O'Keefe S.J. J. Med. Chem. PubMed Scopus Google Scholar). In to p38, have reports for and the clinical of inhibitors that of p38. the of highly inhibitors that have to clinical numerous reports have to that compounds from structural classes and selectivity for over p38 A. Lin A. Smeal T. Derijard B. Cobb M. Davis R. Karin M. Mol. Cell. Biol. 1994; 14: 6683-6688Crossref PubMed Scopus (436) Google Scholar, 15Swahn B.M. Xue Y. Arzel E. Kallin E. Magnus A. Plobeck N. Viklund J. Bioorg. Med. Chem. Lett. 2006; 16: 1397-1401Crossref PubMed Scopus (51) Google Scholar, 17Zhao H. Serby M.D. Xin Z. Szczepankiewicz B.G. Liu M. Kosogof C. Liu B. Nelson L.T. Johnson E.F. Wang S. Pederson T. Gum R.J. Clampit J.E. Haasch D.L. Abad-Zapatero C. Fry E.H. Rondinone C. Trevillyan J.M. Sham H.L. Liu G. J. Med. Chem. 2006; 49: 4455-4458Crossref PubMed Scopus (69) Google Scholar, R.M. M.J. J.A. M. Dunn S. J.R. M. P. J.L. S.A. G. Wang R. Bioorg. Med. Chem. Lett. PubMed Scopus Google Scholar, P. V. S. Y. M. C. D. Cirillo R. D. S. A. C. P.A. J. Med. Chem. 2005; 48: PubMed Scopus Google Scholar, B.G. Kosogof C. Nelson L.T. Liu G. Liu B. H. Serby M.D. Xin Z. Liu M. Gum R.J. Haasch D.L. Wang S. Clampit J.E. Johnson E.F. C. S.A. K. Abad-Zapatero C. Fry E.H. Sham H.L. Rondinone Trevillyan J.M. J. Med. Chem. 2006; 49: PubMed Scopus Google Scholar). The of p38 (7Dominguez C. Powers D.A. Tamayo N. Curr. Opin. Drug Discov. Dev. 2005; 8: 421-430PubMed Google Scholar) this selectivity in in a class of indazole JNK3 inhibitors that were p38 with the of compound that a selectivity for JNK3 over p38 B.M. F. Kallin E. J. T. Viklund J. P. Xue Y. L. Bioorg. Med. Chem. Lett. 2005; PubMed Scopus Google Scholar). The on inhibitors came protein which as drug for T. L. A. M. J. C. Med. PubMed Scopus Google S. M. P. Davis R.J. S. P. U. S. A. PubMed Scopus Google Scholar, T. Weller M. A. U. S. A. 2001; PubMed Scopus Google and H. Y. T. D. M. Y. H. Y. M. Med. PubMed Scopus Google Scholar). for and have J.E. Liu L. G. S. Wang Z. J.R. E.A. O'Keefe S.J. O'Neill E.A. D.M. D.M. Bioorg. Lett. PubMed Scopus Google Scholar, D. O'Keefe S.J. G. Biol. PubMed Scopus Google Scholar, Lee Lee S. J.M. Lee T.G. J. PubMed Scopus Google Scholar, G. J. P.V. Chem. Biol. Full Text Full Text PDF PubMed Scopus Google Scholar, L. Pav S. White D.M. S. M.L. Pargellis Biol. 1997; 4: PubMed Scopus Google Scholar, Y. T. J.T. W. P.R. Su Full Text Full Text PDF PubMed Scopus Google Scholar). In Tong L. Pav S. White D.M. S. M.L. Pargellis Biol. 1997; 4: PubMed Scopus Google Scholar) the of the with the of the of the with the of a within the ATP binding of p38. In J. A. Frantz B. O'Neill E.A. G. O'Keefe S.J. Li B. C. de S. A. B. N. Hermes J. P. Biochemistry. PubMed Scopus Google Scholar) that p38 inhibitors be to 3 μm) on p38 the in p38 to the found in the K. S. V. M.J. P.R. Su Chem. Biol. 1997; 4: Full Text PDF PubMed Scopus Google Scholar) this to be for p38 selectivity over In G. J. P.V. Chem. Biol. Full Text Full Text PDF PubMed Scopus Google Scholar) the of which that the of JNK3 a that the planar the smaller binding of JNK3 this compound highly over p38, which has a larger ATP binding the a structural for JNK3 G. J. P.V. Chem. Biol. Full Text Full Text PDF PubMed Scopus Google Scholar). the for as a drug and the of a structural classes of compounds that have B.M. Xue Y. Arzel E. Kallin E. Magnus A. Plobeck N. Viklund J. Bioorg. Med. Chem. Lett. 2006; 16: 1397-1401Crossref PubMed Scopus (51) Google Scholar, 17Zhao H. Serby M.D. Xin Z. Szczepankiewicz B.G. Liu M. Kosogof C. Liu B. Nelson L.T. Johnson E.F. Wang S. Pederson T. Gum R.J. Clampit J.E. Haasch D.L. Abad-Zapatero C. Fry E.H. Rondinone C. Trevillyan J.M. Sham H.L. Liu G. J. Med. Chem. 2006; 49: 4455-4458Crossref PubMed Scopus (69) Google Scholar, R.M. M.J. J.A. M. Dunn S. J.R. M. P. J.L. S.A. G. Wang R. Bioorg. Med. Chem. Lett. PubMed Scopus Google Scholar, P. V. S. Y. M. C. D. Cirillo R. D. S. A. C. P.A. J. Med. Chem. 2005; 48: PubMed Scopus Google Scholar, B.G. Kosogof C. Nelson L.T. Liu G. Liu B. H. Serby M.D. Xin Z. Liu M. Gum R.J. Haasch D.L. Wang S. Clampit J.E. Johnson E.F. C. S.A. K. Abad-Zapatero C. Fry E.H. Sham H.L. Rondinone Trevillyan J.M. J. Med. Chem. 2006; 49: PubMed Scopus Google we set out to selectivity over p38 be with indazole class of compounds and were to selectivity for JNK3 over p38. to aminopyrazole class of compounds that compounds with >2800-fold selectivity for JNK3 over p38. To do this we traditional structure-activity by and cell-based with structure-based drug design. 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The for of the structural features between the two the of compound with the in SR-3737 the indazole of SR-3737 with the of compound the N-linked phenyl of SR-3737 with the N-linked of compound The phenyl of SR-3737 to binding to p38 compared with compound that IC50 were the 3 for the p38 protein are To better the structural and differences between JNK3 and p38 with the compounds we p38, and the compounds the protein of JNK3 p38 with SR-3737 and compound from J.E. Liu L. G. S. Wang Z. J.R. E.A. O'Keefe S.J. O'Neill E.A. D.M. D.M. Bioorg. Lett. PubMed Scopus Google Scholar). the of the binding with the of the binding with and compound from J.E. Liu L. G. S. Wang Z. J.R. E.A. O'Keefe S.J. O'Neill E.A. D.M. D.M. Bioorg. Lett. PubMed Scopus Google Scholar). the of the binding with and compound from J.E. Liu L. G. S. Wang Z. J.R. E.A. O'Keefe S.J. O'Neill E.A. D.M. D.M. Bioorg. Lett. PubMed Scopus Google Scholar). The of this to design inhibitors that were over p38 and to the structure-activity were within the inhibitors that this To do this we employed traditional medicinal chemistry principles and this with structure-based drug design. drug design has in the of a of such as the B.M. J.J. C.N. 1994; PubMed Scopus (62) Google and including Z. Li Y. E. D.L. C. J.A. L.C. J. Biol. Chem. 1994; Full Text PDF PubMed Google Scholar, B.D. J.A. E.A. J.C. Lin D. Anderson J.R. J. Med. Chem. 1994; PubMed Scopus Google Scholar) and P.A. Chem. Biol. 2: Full Text PDF PubMed Scopus Google Scholar, S.W. J.F. J.E. K. J.A. D.A. Su J. Med. Chem. 1997; PubMed Scopus Google Scholar). in the of for the kinase by the that to the of the T. W. P. B. J. PubMed Scopus Google Scholar). numerous of p38 with inhibitors have J.E. Liu L. G. S. Wang Z. J.R. E.A. O'Keefe S.J. O'Neill E.A. D.M. D.M. Bioorg. Lett. PubMed Scopus Google Scholar, D. O'Keefe S.J. G. Biol. PubMed Scopus Google Scholar, L. Pav S. White D.M. S. M.L. 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Small Molecule c-jun-N-Terminal Kinase Inhibitors Protect Dopaminergic Neurons in a Model of Parkinson’s Disease
Jeremy W. Chambers, Alok S. Pachori, Shannon Howard et al.|ACS Chemical Neuroscience|2011
Cited by 70Open Access

There are currently no drugs to treat neurodegeneration in Parkinson's disease (PD) and all existing medications only treat symptoms, lose efficacy over time, and produce untoward side effects. In the current work, we report the first highly selective, orally bioavailable, c-jun-N-terminal kinase (JNK) inhibitor for protection of dopaminergic neurons in vitro and in vivo. At 300 nM this compound showed statistically significant protection of primary dopaminergic neurons exposed to 1-methyl-4-phenylpyridinium (MPP(+)), had pharmacokinetic properties in rodents consistent with twice daily (b.i.d.) dosing, and was orally efficacious at 30 mg/kg in a mouse 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP) model of Parkinson's disease. Moreover, a dose-dependent target modulation of c-jun phosphorylation served as a biomarker for demonstrating on-target inhibition of JNK as the mechanism of action for this compound. Collectively these results suggest that this JNK inhibitor could be a promising therapeutic neuroprotective agent in the treatment of Parkinson's disease.