Peter M. Davies

Summary 1. Measurements of ecological patterns are often used as primary biological indicators of river health. However, these patterns provide little information about important stream ecosystem processes (e.g. the sources and fate of energy and nutrients). The direct measurement of these processes is considered fundamental to the determination of the health of stream and river ecosystems. 2. In this paper we used two basic approaches to assess stream ecosystem response to catchment disturbance and, particularly, to the loss of riparian vegetation in different forested biomes across Australia. Benthic gross primary production (GPP) and respiration ( R 24 ) provided measures of the amounts of organic carbon produced and consumed within the system, respectively. Stable isotope analysis was used to trace the fate of terrestrial and instream sources of organic matter in the aquatic food web. In a focal catchment in SE Queensland, additional measurements were taken of riparian attributes, catchment features and water quality. 3. Baseline measurements of GPP and R 24 from undisturbed forest streams provided reference values for healthy streams for comparison with sites where the catchment or riparian vegetation had been disturbed. These values of metabolism were low by world standards in all biomes examined. Preliminary data from the Mary River catchment in SE Queensland indicated that these parameters were sensitive to variations in riparian canopy cover and, to a lesser extent, catchment clearing, and predictive models were developed. The ratio P : R (GPP : R 24 ) was used to determine whether sites were net consumers ( P < R ) or producers ( P > R ) of carbon but this was not considered a reliable indicator of stream health on its own. 4. Although forest streams were typically net consumers of carbon ( P < < R ), stable isotope analysis of metazoan food webs indicated a high dependence on inconspicuous epilithic algae in some biomes. 5. A dramatic decline in the health of forest streams was observed when GPP substantially exceeded R 24 , especially when instream primary producers shifted from palatable unicellular algae to prolific filamentous green algae and macrophytes. These sources of instream production do not appear to enter aquatic food webs, either directly through grazing or indirectly through a detrital loop. Accumulation of these plants has led to changes in channel morphology, loss of aquatic habitat and often a major decline in water quality in some of the streams studied.

SUMMARY 1. Many Australian inland rivers are characterised by vast floodplains with a network of anastomosing channels that interconnect only during unpredictable flooding. For much of the time, however, rivers are reduced to a string of disconnected and highly turbid waterholes. Given these features, we predicted that aquatic primary production would be light‐limited and the riverine food web would be dependent on terrestrial carbon from floodplain exchanges and direct riparian inputs. 2. To test these predictions, we measured rates of benthic primary production and respiration and sampled primary sources of organic carbon and consumers for stable isotope analysis in several river waterholes at four locations in the Cooper Creek system in central Australia. 3. A conspicuous band of filamentous algae was observed along the shallow littoral zone of the larger waterholes. Despite the high turbidity, benthic gross primary production in this narrow zone was very high (1.7–3.6 g C m −2 day −1 ); about two orders of magnitude greater than that measured in the main channel. 4. Stable carbon isotope analysis confirmed that the band of algae was the major source of energy for aquatic consumers, ultimately supporting large populations of crustaceans and fish. Variation in the stable carbon and nitrogen isotope signatures of consumers suggested that zooplankton was the other likely major source. 5. Existing ecosystem models of large rivers often emphasise the importance of longitudinal or lateral inputs of terrestrial organic matter as a source of organic carbon for aquatic consumers. Our data suggest that, despite the presence of large amounts of terrestrial carbon, there was no evidence of it being a significant contributor to the aquatic food web in this floodplain river system.

The tropical rivers of northern Australia have received international and national recognition for their high ecological and cultural values. Unlike many tropical systems elsewhere in the world and their temperate Australian counterparts, they have largely unmodified flow regimes and are comparatively free from the impacts associated with intensive land use. However, there is growing demand for agricultural development and existing pressures, such as invasive plants and feral animals, threaten their ecological integrity. Using the international literature to provide a conceptual framework and drawing on limited published and unpublished data on rivers in northern Australia, we have derived five general principles about food webs and related ecosystem processes that both characterise tropical rivers of northern Australia and have important implications for their management. These are: (1) the seasonal hydrology is a strong driver of ecosystem processes and food-web structure; (2) hydrological connectivity is largely intact and underpins important terrestrial–aquatic food-web subsidies; (3) river and wetland food webs are strongly dependent on algal production; (4) a few common macroconsumer species have a strong influence on benthic food webs; and (5) omnivory is widespread and food chains are short. The implications of these ecosystem attributes for the management and protection of tropical rivers and wetlands of northern Australian are discussed in relation to known threats. These principles provide a framework for the formation of testable hypotheses in future research programmes.