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Amy Beckman

University of Minnesota

ORCID: 0000-0002-1139-1321

Publishes on Lymphoma Diagnosis and Treatment, CNS Lymphoma Diagnosis and Treatment, Glioma Diagnosis and Treatment. 9 papers and 250 citations.

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250Total Citations

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Hematologic Cancer after Gene Therapy for Cerebral Adrenoleukodystrophy
Christine Duncan, Jacob R. Bledsoe, Bartosz Grzywacz et al.|New England Journal of Medicine|2024
Cited by 115Open Access

BACKGROUND: complementary DNA (Lenti-D) has shown efficacy in clinical studies for the treatment of cerebral adrenoleukodystrophy. However, the risk of oncogenesis with eli-cel is unclear. METHODS: We performed integration-site analysis, genetic studies, flow cytometry, and morphologic studies in peripheral-blood and bone marrow samples from patients who received eli-cel therapy in two completed phase 2-3 studies (ALD-102 and ALD-104) and an ongoing follow-up study (LTF-304) involving the patients in both ALD-102 and ALD-104. RESULTS: ), and 1 of the 7 patients had monosomy 7. Of the 5 patients with MDS with excess blasts or MDS with unilineage dysplasia who underwent allogeneic hematopoietic stem-cell transplantation (HSCT), 4 patients remain free of MDS without recurrence of symptoms of cerebral adrenoleukodystrophy, and 1 patient died from presumed graft-versus-host disease 20 months after HSCT (49 months after receiving eli-cel). The patient with AML is alive and had full donor chimerism after HSCT; the patient with the most recent case of MDS is alive and awaiting HSCT. CONCLUSIONS: Hematologic cancer developed in a subgroup of patients who were treated with eli-cel; the cases are associated with clonal vector insertions within oncogenes and clonal evolution with acquisition of somatic genetic defects. (Funded by Bluebird Bio; ALD-102, ALD-104, and LTF-304 ClinicalTrials.gov numbers, NCT01896102, NCT03852498, and NCT02698579, respectively.).

The Cancer Immunotherapy Biomarker Testing Landscape
Eric Walk, Sophia Yohe, Amy Beckman et al.|Archives of Pathology & Laboratory Medicine|2019
Cited by 97Open Access

CONTEXT.—: Cancer immunotherapy provides unprecedented rates of durable clinical benefit to late-stage cancer patients across many tumor types, but there remains a critical need for biomarkers to accurately predict clinical response. Although some cancer immunotherapy tests are associated with approved therapies and considered validated, other biomarkers are still emerging and at various states of clinical and translational exploration. OBJECTIVE.—: To provide pathologists with a current and practical update on the evolving field of cancer immunotherapy testing. The scientific background, clinical data, and testing methodology for the following cancer immunotherapy biomarkers are reviewed: programmed death ligand-1 (PD-L1), mismatch repair, microsatellite instability, tumor mutational burden, polymerase δ and ε mutations, cancer neoantigens, tumor-infiltrating lymphocytes, transcriptional signatures of immune responsiveness, cancer immunotherapy resistance biomarkers, and the microbiome. DATA SOURCES.—: Selected scientific publications and clinical trial data representing the current field of cancer immunotherapy. CONCLUSIONS.—: The cancer immunotherapy field, including the use of biomarker testing to predict patient response, is still in evolution. PD-L1, mismatch repair, and microsatellite instability testing are helping to guide the use of US Food and Drug Administration-approved therapies, but there remains a need for better predictors of response and resistance. Several categories of tumor and patient characteristics underlying immune responsiveness are emerging and may represent the next generation of cancer immunotherapy predictive biomarkers. Pathologists have important roles and responsibilities as the field of cancer immunotherapy continues to develop, including leadership of translational studies, exploration of novel biomarkers, and the accurate and timely implementation of newly approved and validated companion diagnostics.

High-dose AraC is essential for the treatment of ML-DS independent of postinduction MRD: results of the COG AAML1531 trial
Cited by 31Open Access

Myeloid leukemia in children with Down syndrome (ML-DS) is associated with young age and somatic GATA1 mutations. Because of high event-free survival (EFS) and hypersensitivity of the leukemic blasts to chemotherapy, the prior Children's Oncology Group protocol ML-DS protocol (AAML0431) reduced overall treatment intensity but lacking risk stratification, retained the high-dose cytarabine course (HD-AraC), which was highly associated with infectious morbidity. Despite high EFS of ML-DS, survival for those who relapse is rare. AAML1531 introduced therapeutic risk stratification based on the previously identified prognostic factor, measurable residual disease (MRD) at the end of the first induction course. Standard risk (SR) patients were identified by negative MRD using flow cytometry (<0.05%) and did not receive the historically administered HD-AraC course. Interim analysis of 114 SR patients revealed a 2-year EFS of 85.6% (95% confidence interval [CI], 75.7-95.5), which was significantly lower than for MRD- patients treated with HD-AraC on AAML0431 (P = .0002). Overall survival at 2 years was 91.0% (95% CI, 83.8-95.0). Twelve SR patients relapsed, mostly within 1 year from study entry and had a 1-year OS of 16.7% (95% CI, 2.7-41.3). Complex karyotypes were more frequent in SR patients who relapsed compared with those who did not (36% vs 9%; P = .0248). MRD by error-corrected sequencing of GATA1 mutations was piloted in 18 SR patients and detectable in 60% who relapsed vs 23% who did not (P = .2682). Patients with SR ML-DS had worse outcomes without HD-AraC after risk classification based on flow cytometric MRD.

High-Grade B-Cell Lymphoma, Not Otherwise Specified (HGBL, NOS): Characteristics, Treatment, and Outcomes from 17 Academic US Centers
Cited by 4

Abstract Background: The term HGBL, NOS was introduced by the World Health Organization (WHO) in 2016 for aggressive B-cell lymphomas with Burkitt lymphoma-like (BLL) or blastoid cytomorphology that lack double-hit genetics and do not meet criteria for other entities. Diagnostic patterns and prognosis of these rare tumors are not well understood. We examined the characteristics and outcomes of patients (pts) with HGBL, NOS diagnosed in 17 academic centers across the United States. Methods: We collected retrospective data on HGBL, NOS cases diagnosed by academic hematopathologists in 2017-2021; 8 centers performed a local review by lymphoma pathology experts to confirm fulfillment of the WHO criteria; pathology reports were reviewed centrally. We excluded pts not tested for MYC rearrangement (MYC-R), any double/triple-hit, diffuse large B-cell, or lymphoblastic lymphomas. Immunohistochemistry (IHC) and cytogenetic tests were done locally. Outcomes included rates of complete response (CR), progression-free (PFS) and overall survival (OS) estimated with 95% confidence intervals (CI). Results: Among 126 pts with HGBL, NOS, median age was 64 years (range 18-91), 67% were male, and 3 were HIV+. Advanced stage was present in 68%, poor performance status (PS, ECOG ≥2) in 21%, high serum lactate dehydrogenase (LDH) in 68%, extranodal (EN) sites in 79%, central nervous system (CNS) involvement in 6%, and International Prognostic Index (IPI) ≥ 3 in 55%. Cytomorphology was reported as BLL in 59 (47%) cases, blastoid in 28 (22%), and unspecified in 39 (31%). By IHC, 83% had germinal center B-cell (GCB) phenotype. Using cases with available data, CD10 was expressed in 79%, BCL6 in 81%, MUM1/IRF4 in 48%, MYC in 73%, BCL2 in 55% (dual MYC/BCL2 expressor [DEL]: 37%), CD5 in 13%, and median Ki-67 was 95%. MYC-R (single-hit) was detected in 27% (Fig A), MYC extra copies (EC) in 9%, BCL2-R in 13%, and BCL6-R in 10%. MYC-EC were present in 16% of cases with BCL2-R or BCL6-R, and BCL2/BCL6-EC in 12% of those with MYC-R. Blastoid tumors were more likely than BLL to involve &amp;gt;1 EN site or to have BCL2-R (Fig B). 9 cases were assessed by next generation sequencing and 5 (56%) had a TP53 mutation. Cases which underwent confirmatory pathology review (N=74) did not differ from others clinically but more often had a well-defined HGBL morphology (77% vs 58%, P=.031) and less often MYC-R (20% vs. 37%, P=.004). The most common first-line regimens (among treated pts, N=121) were DA-EPOCH-R (50%) and RCHOP (35%), with few pts receiving HyperCVAD/MA (5%) or CODOX-M±IVAC (2%); 97% received rituximab, and 44% CNS prophylaxis. Pts selected for DA-EPOCH-R vs. RCHOP were younger (median 61 vs. 68 years, P=.006), more often had stage 3/4 (P=.04), BLL morphology (56% vs. 29%, P=.009) or MYC-R (31% vs. 14%, P=.06). CR was attained in 62% of pts, whereas 20% had progressive disease. The most frequent salvage regimens (± rituximab) included ICE (N=12), DHAP (N=6), and GemOx (N=5). 3 pts underwent autologous, and 3 allogeneic transplant (2/3 subsequently relapsed). 13 received chimeric antigen receptor (CAR) T-cells, with response noted in 7 (54%) and CR in 4 (31%); HGBL relapsed in 3/7 (43%) responders. With median follow-up of 2.7 years, 39% of pts relapsed, and 33% died. Of 49 observed relapses, 13 (27%) involved the CNS. PFS estimate at 2 years was 51% (95% CI, 42-60%) and OS was 68% (95% CI, 58-76%; Fig C). PFS and OS were not significantly associated with age or PS, but stage and LDH were prognostic (Fig D-G). Furthermore, PFS did not differ by BLL/blastoid morphology, MYC-R status or DEL status, but non-GCB tumors had somewhat worse PFS (Fig H-J). We observed no significant PFS (or OS) difference between pts selected for RCHOP vs. DA-EPOCH-R (P=.83 for PFS, Fig K; P=.55 for OS) in aggregate or in any subset, except for de novo tumors with BLL morphology (N=41), where DA-EPOCH-R showed a superior 2-year PFS (73% vs 38% for RCHOP, P=.027; stratified by IPI: P=.040, Fig L). Conclusions: HGBL, NOS, as diagnosed in current academic practice, is highly heterogeneous, highlighting the need to classify high-grade lymphomas using molecular rather than morphologic features. Considering poor survival in all age groups (except for few pts with early stage and normal LDH), lack of prognostic significance of MYC-R, DEL status, or cytomorphology, HGBL, NOS needs prospective trials to delineate prognostic biomarkers, the role of intensified chemotherapy, and novel therapeutic approaches. Figure 1 Figure 1. Disclosures Landsburg: Triphase: Research Funding; Takeda: Research Funding; Curis: Research Funding; Incyte: Membership on an entity's Board of Directors or advisory committees; Karyopharm: Membership on an entity's Board of Directors or advisory committees, Other: DSMB member; ADCT: Membership on an entity's Board of Directors or advisory committees; Morphosys: Membership on an entity's Board of Directors or advisory committees. Hughes: Acerta Pharma: Research Funding; AstraZeneca: Consultancy, Membership on an entity's Board of Directors or advisory committees; AbbVie: Consultancy, Membership on an entity's Board of Directors or advisory committees; Genzyme: Consultancy; Janssen: Consultancy; Karyopharm: Membership on an entity's Board of Directors or advisory committees. Sandoval-Sus: SeaGen, Janssen, MassiveBio, TG: Other: Advisory Board; BMS: Other: Advisory Board, Speakers Bureau. Kothari: Incyte pharmaceuticals: Consultancy, Honoraria; Karyopharm pharmaceuticals: Consultancy, Honoraria. Torka: TG Therapeutics: Membership on an entity's Board of Directors or advisory committees. Smith: Acerta Pharma BV: Research Funding; ADC Therapeutics: Consultancy; AstraZeneca: Consultancy, Research Funding; De Novo Biopharma: Research Funding; Ignyta (spouse): Research Funding; Beigene: Consultancy, Research Funding; Portola Pharmaceuticals: Research Funding; Incyte: Consultancy; Incyte Corporation: Research Funding; Karyopharm: Consultancy; KITE pharm: Consultancy; Merck Sharp &amp; Dohme Corp: Research Funding; Ayala (spouse): Research Funding; Bayer: Research Funding; Genentech: Research Funding; Bristol Myers Squibb (spouse): Research Funding; Millenium/Takeda: Consultancy. Epperla: Genzyme: Honoraria; Karyopharm: Other: Ad Board; Beigene: Speakers Bureau; Verastem: Speakers Bureau. Bond: Kite/Gilead: Honoraria. Naik: Sanofi: Other: Virtual Advisory Board Member ; Takeda: Other: Virtual Advisory Board Member ; Kite: Other: Virtual Advisory Board Member. Kamdar: ADC Therapeutics: Consultancy; AbbVie: Consultancy; KaryoPharm: Consultancy; Kite: Consultancy; Adaptive Biotechnologies: Consultancy; AstraZeneca: Consultancy; Celgene (BMS): Consultancy; TG Therapeutics: Research Funding; Genentech: Research Funding; Genetech: Other; Celgene: Other; SeaGen: Speakers Bureau. Haverkos: Viracta Therapeutics: Consultancy. Karmali: BMS/Celgene/Juno: Consultancy, Research Funding; Takeda: Research Funding; Roche: Consultancy; Epizyme: Consultancy; Janssen/Pharmacyclics: Consultancy; EUSA: Consultancy; Genentech: Consultancy; Karyopharm: Consultancy; AstraZeneca: Speakers Bureau; Kite, a Gilead Company: Consultancy, Research Funding, Speakers Bureau; Morphosys: Consultancy, Speakers Bureau; BeiGene: Consultancy, Speakers Bureau. Vose: Kite, a Gilead Company: Honoraria, Research Funding. Olszewski: PrecisionBio: Research Funding; Celldex Therapeutics: Research Funding; TG Therapeutics: Research Funding; Acrotech Pharma: Research Funding; Genentech, Inc.: Research Funding; Genmab: Research Funding.

High-Grade B-Cell Lymphoma, Not Otherwise Specified (HGBL, NOS): Central Nervous System (CNS) Involvement, Prophylaxis, and Recurrence Risk in a Multi-Institutional Series
Cited by 3

Background: HGBL, NOS encompasses aggressive B-cell lymphomas with Burkitt lymphoma-like (BLL) or blastoid cytomorphology which are otherwise unclassifiable. We have previously described characteristics and outcomes of HGBL, NOS treated in 20 academic centers across the United States (Zayac et al, ASH 2021). Here, we report the CNS-related outcomes from this multi-institutional dataset. Methods: We collected retrospective data on adult patients (pts) with HGBL, NOS diagnosed by academic hematopathologists in 2017-2021, excluding cases with unknown MYC rearrangement (MYC-R) status, double/triple-hit lymphomas, any diffuse large B-cell lymphoma (DLBCL, NOS) or other specified entities. Ten participating institutions conducted formal local pathology review; immunohistochemistry and cytogenetics were performed locally. Outcomes included progression-free (PFS) and overall survival (OS), and cumulative incidence function (CIF) of CNS recurrence (CNSrec accounting for competing risk of systemic relapse), estimated with 95% confidence intervals (CI). Results: Among 160 pts (median age 64 years, 68% male, 82% germinal center B-cell [GCB] tumors), the CNS International Prognostic Index (IPI) was low in 21%, intermediate (int) in 44%, high in 30%, and missing in 5%. Baseline CNS involvement (CNSinv) was present in 11 pts (7%), including leptomeningeal in 6, parenchymal in 4, and both in 1 case. Only 2 factors were significantly associated with CNSinv: testis or female pelvis involvement (odds ratio [OR]=6.40; 95%CI: 1.09-37.7) and MYC-R (OR=3.51; 95%CI: 1.01-12.2). Pts with CNSinv were treated with R-CODOX-M/IVAC (27%), R-EPOCH (18%), R-hyperCVAD (18%), or R-CHOP + high-dose methotrexate (HDMTX, 18%). CNSinv was associated with numerically lower complete response rate (55% with vs 70% without, P=.32), PFS (3-year PFS: 53% and 55%, respectively; log-rank P=.45), and OS (2-year OS, 51% and 69%, respectively, P=.54). Data on CNS-directed prophylaxis (ppx) were available for 139 pts without baseline CNSinv. CNS ppx was administered to 48%, including intrathecal (IT)-only in 29% (median 4 doses, range 1-10), intravenous HDMTX in 7% (median 2 doses, range 1-5), and both IT and HDMTX in 12%. Among 59 recurrences after initial therapy, 16 involved the CNS: 7 leptomeningeal-only, 4 parenchymal-only, 4 involving both compartments, and 1 unspecified. Median time to CNSrec was 4.4 months (95% CI: 2.6-9.0), not significantly different from systemic recurrences (median 5.3 months, P=0.58). Median OS after CNSrec was 5.3 months (95% CI: 2.9-13.6), also not significantly different from systemic recurrences (median 7.7 months, P=.18). For all 160 pts, the CIF of CNSrec at 3 years was 11.7% (95% CI: 6.9-17.9), but pts with baseline CNSinv were at highest risk (CIF=57.6% vs. 8.0% for others; P<0.001 on Gray's test) and were excluded from further analysis of risk factors. Among other CNSrec events, 4/10 (40%) were in non-GCB HGBL, 5 of 6 tested (83%) had dual MYC/BCL2 expression (DEL), and 4 of 4 tested carried a TP53 alteration. CNSrec was associated with high-int/high IPI (CIF=13.4% vs. 1.7% for low/int; P=.020) but not CNS-IPI (7.5% high vs. 6.8% low/int; P=.85). Other significant risk factors for CNSrec included: involvement of bone marrow (CIF=20.5% vs. 4.5% for none, P=.002) or blood (47.2% vs. 5.3% for none, P<.001), non-GCB (20.5% vs. 5.9% for GCB, P=.021, Fig. A), DEL (10.8% vs. 1.5% for others, P=.019), and CD5+ HGBL (27.5% vs. 6.0% for CD5-, P=.013). The risk of subsequent CNSrec did not differ according to first-line therapy, including comparing R-CHOP (CIF=10.2%) vs. more intensive regimens (7.0%, P=0.77), or R-CHOP vs. R-EPOCH specifically (CIF=6.7%, P=.74). We also observed no difference in CNSrec after receipt of any form of CNS ppx (P=.59; Fig. B), or specifically HDMTX (P=.18) or IT methotrexate MTX (P=.94). Conclusions: In HGBL, NOS baseline CNSinv is uncommon, but highly prognostic for future CNSrec. Both CNS and systemic recurrences portend poor prognosis. CNS-IPI may not predict higher risk of CNSrec in HGBL, NOS. Although our study is limited by the sample size in this rare and heterogeneous disease, the CNSrec was higher in pts with blood/marrow involvement or the non-GCB or MYC/BCL2 DEL HGBL. Because the >10% risk of CNSrec is not mitigated by standard CNSppx modalities, HGBL, NOS should be included in trials of novel CNSppx approaches along with high-risk DLBCL or double-hit lymphoma. Figure 1View largeDownload PPTFigure 1View largeDownload PPT Close modal