J

Johannes Ruscheinski

University of California, San Diego

Publishes on Bioinformatics and Genomic Networks, Scientific Computing and Data Management, Cell Image Analysis Techniques. 7 papers and 7.4k citations.

7Publications
7.4kTotal Citations
Bioinformatics and Genomic NetworksScientific Computing and Data ManagementCell Image Analysis TechniquesGenetics, Bioinformatics, and Biomedical ResearchGenomics and Phylogenetic Studies

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Top publicationsby citations

Cytoscape 2.8: new features for data integration and network visualization
Michael Smoot, Keiichiro Ono, Johannes Ruscheinski et al.|Bioinformatics|2010
Cited by 5kOpen Access

UNLABELLED: Cytoscape is a popular bioinformatics package for biological network visualization and data integration. Version 2.8 introduces two powerful new features--Custom Node Graphics and Attribute Equations--which can be used jointly to greatly enhance Cytoscape's data integration and visualization capabilities. Custom Node Graphics allow an image to be projected onto a node, including images generated dynamically or at remote locations. Attribute Equations provide Cytoscape with spreadsheet-like functionality in which the value of an attribute is computed dynamically as a function of other attributes and network properties. AVAILABILITY AND IMPLEMENTATION: Cytoscape is a desktop Java application released under the Library Gnu Public License (LGPL). Binary install bundles and source code for Cytoscape 2.8 are available for download from http://cytoscape.org.

Cytoscape 2.8: new features for data integration and network
E. Smoot, Keiichiro Ono, Johannes Ruscheinski et al.|Unknown|2011
Cited by 813

Summary: Cytoscape is a popular bioinformatics package for biological network visualization and data integration. Version 2.8 introduces two powerful new features—Custom Node Graphics and Attribute Equations—which can be used jointly to greatly enhance Cytoscape’s data integration and visualization capabilities. Custom Node Graphics allow an image to be projected onto a node, including images generated dynamically or at remote locations. Attribute Equations provide Cytoscape with spreadsheet-like functionality in which the value of an attribute is computed dynamically as a function of other attributes and network properties. Availability and implementation: Cytoscape is a desktop Java application released under the Library Gnu Public License (LGPL). Binary install bundles and source code for Cytoscape 2.8 are available for download from http://cytoscape.org.