Cell clustering for spatial transcriptomics data with graph neural networksJiachen Li, Hong‐Bin Shen, Ye Yuan et al.|Nature Computational Science|2022Cited by 223
TFvelo: gene regulation inspired RNA velocity estimationJiachen Li, Hong‐Bin Shen, Xiaoyong Pan et al.|Nature Communications|2024Cited by 40
CINS: Cell Interaction Network inference from Single cell expression dataYe Yuan, Ziv Bar‐Joseph, Carlos Cosme et al.|PLoS Computational Biology|2022Cited by 10
TSvelo: Comprehensive RNA velocity by modeling the cascade of gene regulation, transcription and splicingJiachen Li, Ye Yuan, Hong-Bin Shen et al.|bioRxiv (Cold Spring Harbor Laboratory)|2024Cited by 0