MOLE 2.0: advanced approach for analysis of biomacromolecular channelsDavid Sehnal, Jaroslav Koča, Pavel Banáš et al.|Journal of Cheminformatics|2013Cited by 347
MOLEonline 2.0: interactive web-based analysis of biomacromolecular channelsKarel Berka, Michal Otyepka, Jaroslav Koča et al.|Nucleic Acids Research|2012Cited by 145
AtomicChargeCalculator: interactive web-based calculation of atomic charges in large biomolecular complexes and drug-like moleculesCrina-Maria Ionescu, Jaroslav Koča, Stanislav Geidl et al.|Journal of Cheminformatics|2015Cited by 67
Predicting p<i>K</i><sub>a</sub> Values of Substituted Phenols from Atomic Charges: Comparison of Different Quantum Mechanical Methods and Charge Distribution SchemesRadka Svobodová Vařeková, Jaroslav Koča, Heinrich J. Huber et al.|Journal of Chemical Information and Modeling|2011Cited by 55
Rapid Calculation of Accurate Atomic Charges for Proteins via the Electronegativity Equalization MethodCrina-Maria Ionescu, Jaroslav Koča, Radka Svobodová Vařeková et al.|Journal of Chemical Information and Modeling|2013Cited by 29