Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0Jan Schellenberger, Bernhard Ø. Palsson, Richard Que et al.|Nature Protocols|2011Cited by 1.9k
Deciphering cell–cell interactions and communication from gene expressionErick Armingol, Nathan E. Lewis, Adam Officer et al.|Nature Reviews Genetics|2020Cited by 1.3k
BiGG Models: A platform for integrating, standardizing and sharing genome-scale modelsZachary A. King, Nathan E. Lewis, Justin S. Lu et al.|Nucleic Acids Research|2015Cited by 1k
Omic data from evolved E. coli are consistent with computed optimal growth from genome‐scale modelsNathan E. Lewis, Bernhard Ø. Palsson, Kim Hixson et al.|Molecular Systems Biology|2010Cited by 826
Constraining the metabolic genotype–phenotype relationship using a phylogeny of in silico methodsNathan E. Lewis, Bernhard Ø. Palsson, Harish Nagarajan|Nature Reviews Microbiology|2012Cited by 809