NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formatsJason W. Sahl, Paul Keim, Darrin Lemmer et al.|Microbial Genomics|2016Cited by 279
KlebSeq, a Diagnostic Tool for Surveillance, Detection, and Monitoring of Klebsiella pneumoniaeJolene R. Bowers, Paul Keim, Darrin Lemmer et al.|Journal of Clinical Microbiology|2016Cited by 59
An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in ArizonaJason T. Ladner, Paul Keim, Darrin Lemmer et al.|mBio|2020Cited by 33
The Northern Arizona SNP Pipeline (NASP): accurate, flexible, and rapid identification of SNPs in WGS datasetsJason W. Sahl, Paul Keim, Darrin Lemmer et al.|bioRxiv (Cold Spring Harbor Laboratory)|2016Cited by 25
Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversityEvan Bolyen, J. Gregory Caporaso, Matthew R. Dillon et al.|F1000Research|2020Cited by 16