Exploring Free Energy Landscapes of Large Conformational Changes: Molecular Dynamics with Excited Normal ModesMaurício G. S. Costa, David Pérahia, Paulo M. Bisch et al.|Journal of Chemical Theory and Computation|2015Cited by 70
Free Energy Profiles along Consensus Normal Modes Provide Insight into HIV-1 Protease Flap OpeningPaulo Ricardo Batista, Charles H. Robert, Paulo M. Bisch et al.|Journal of Chemical Theory and Computation|2011Cited by 38
Consensus modes, a robust description of protein collective motions from multiple-minima normal mode analysis—application to the HIV-1 proteasePaulo Ricardo Batista, David Pérahia, Charles H. Robert et al.|Physical Chemistry Chemical Physics|2010Cited by 36
Conformational Equilibrium of CDK/Cyclin Complexes by Molecular Dynamics with Excited Normal ModesNicolas Floquet, David Pérahia, Maurício G. S. Costa et al.|Biophysical Journal|2015Cited by 26
MDexciteR: Enhanced Sampling Molecular Dynamics by Excited Normal Modes or Principal Components Obtained from ExperimentsMaurício G. S. Costa, David Pérahia, Paulo Ricardo Batista et al.|Journal of Chemical Theory and Computation|2023Cited by 12