De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnologyJurgen F. Nijkamp, Jean‐Marc Daran, Paul Klaassen et al.|Microbial Cell Factories|2012Cited by 305
<i>De novo</i> detection of copy number variation by co-assemblyJurgen F. Nijkamp, Dick de Ridder, Marcel A. van den Broek et al.|Bioinformatics|2012Cited by 82
GRASS: a generic algorithm for scaffolding next-generation sequencing assembliesAlexey A. Gritsenko, Dick de Ridder, Jurgen F. Nijkamp et al.|Bioinformatics|2012Cited by 56
Integrating genome assemblies with MAIAJurgen F. Nijkamp, Dick de Ridder, Wynand Winterbach et al.|Bioinformatics|2010Cited by 44
Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGoldJurgen F. Nijkamp, Dick de Ridder, Mihai Pop et al.|Bioinformatics|2013Cited by 37