Cistrome: an integrative platform for transcriptional regulation studiesTao Liu, X. Shirley Liu, Yaron Turpaz et al.|Genome biology|2011Cited by 792
Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouseShenglin Mei, X. Shirley Liu, Qian Qin et al.|Nucleic Acids Research|2016Cited by 672
NOTCH1–RBPJ complexes drive target gene expression through dynamic interactions with superenhancersHongfang Wang, Jon C. Aster, X. Shirley Liu et al.|Proceedings of the National Academy of Sciences|2013Cited by 266
VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysisMacIntosh Cornwell, Henry W. Long, X. Shirley Liu et al.|BMC Bioinformatics|2018Cited by 234
ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipelineQian Qin, X. Shirley Liu, Henry W. Long et al.|BMC Bioinformatics|2016Cited by 144