Improving the Performance of the Amber RNA Force Field by Tuning the Hydrogen-Bonding InteractionsPetra Kührová, Pavel Banáš, Vojtěch Mlýnský et al.|Journal of Chemical Theory and Computation|2019Cited by 155
Extensive Molecular Dynamics Simulations Showing That Canonical G8 and Protonated A38H<sup>+</sup> Forms Are Most Consistent with Crystal Structures of Hairpin RibozymeVojtěch Mlýnský, Michal Otyepka, Pavel Banáš et al.|The Journal of Physical Chemistry B|2010Cited by 88
Comparison of ab Initio, DFT, and Semiempirical QM/MM Approaches for Description of Catalytic Mechanism of Hairpin RibozymeVojtěch Mlýnský, Michal Otyepka, Adrian J. Mulholland et al.|Journal of Chemical Theory and Computation|2014Cited by 70
Toward Convergence in Folding Simulations of RNA Tetraloops: Comparison of Enhanced Sampling Techniques and Effects of Force Field ModificationsVojtěch Mlýnský, Jiřı́ Šponer, Michal Janeček et al.|Journal of Chemical Theory and Computation|2022Cited by 65
Reactive Conformation of the Active Site in the Hairpin Ribozyme Achieved by Molecular Dynamics Simulations with ε/ζ Force Field ReparametrizationsVojtěch Mlýnský, Pavel Banáš, Petra Kührová et al.|The Journal of Physical Chemistry B|2015Cited by 61