ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inferenceJacob L. Steenwyk, Antonis Rokas, Yuanning Li et al.|PLoS Biology|2020Cited by 737
Tempo and Mode of Genome Evolution in the Budding Yeast SubphylumXing‐Xing Shen, Antonis Rokas, Diego Libkind et al.|Cell|2018Cited by 711
A genome-scale phylogeny of the kingdom FungiYuanning Li, Antonis Rokas, Jacob L. Steenwyk et al.|Current Biology|2021Cited by 372
Incongruence in the phylogenomics eraJacob L. Steenwyk, Antonis Rokas, Yuanning Li et al.|Nature Reviews Genetics|2023Cited by 240
PhyKIT: a broadly applicable UNIX shell toolkit for processing and analyzing phylogenomic dataJacob L. Steenwyk, Antonis Rokas, Thomas J. Buida et al.|Bioinformatics|2021Cited by 222