Bo Ren

This study collected past sampling data on total concentrations of 12 heavy metals (Cd, Pb, Cr, Hg, Zn, Cu, Ni, Al, Fe, Mn, As, and Co) in surface water bodies, i.e., 168 rivers and 71 lakes, from 1972 to 2017. The intent was to investigate the levels and sources of heavy metal pollution across five decades and five continents. Mean heavy metal concentrations in global river and lake water, and the number of heavy metals with concentrations greater than the published threshold limits as per the standards of both the World Health Organization (WHO) and the United States Environmental Protection Agency (USEPA) were generally lower in the 1970s and 1980s than in the 1990s, 2000s, and 2010s. Over time, heavy metal pollution in surface water has changed from single metal pollution to mixed metal pollution. Heavy metal concentrations in water, and the number of heavy metals with concentrations above the threshold limits for both WHO and USEPA standards were lower in the developed countries of Europe and North America, and higher in the developing countries of Africa, Asia, and South America. Over time, the main sources of metal pollution have changed from mining and manufacturing to rock weathering and waste discharge. The main metal sources differed across the five continents, with fertilizer and pesticide use, along with rock weathering, being dominant in Africa. Mining and manufacturing, along with rock weathering, were dominant in Asia and Europe. Mining and manufacturing, along with fertilizer and pesticide use, were dominant sources in North America, while four sources (mining and manufacturing, fertilizer and pesticide use, rock weathering, and waste discharge) were responsible for the majority of heavy metal pollution in the river and lake water bodies of South America. Additionally, implementing rigorous standards on metal emissions and recycling metals from wastewater are effective for controlling heavy metal source pollution.

Rhizobial infection and root nodule formation in legumes require recognition of signal molecules produced by the bacteria and their hosts. Here, we show that rhizobial transfer RNA (tRNA)-derived small RNA fragments (tRFs) are signal molecules that modulate host nodulation. Three families of rhizobial tRFs were confirmed to regulate host genes associated with nodule initiation and development through hijacking the host RNA-interference machinery that involves ARGONAUTE 1. Silencing individual tRFs with the use of short tandem target mimics or by overexpressing their targets represses root hair curling and nodule formation, whereas repressing these targets with artificial microRNAs identical to the respective tRFs or mutating these targets with CRISPR-Cas9 promotes nodulation. Our findings thus uncover a bacterial small RNA-mediated mechanism for prokaryote-eukaryote interaction and may pave the way for enhancing nodulation efficiency in legumes.

Soybean is one of the most important oilseed and fodder crops. Benefiting from the efforts of soybean breeders and the development of breeding technology, large number of germplasm has been generated over the last 100 years. Nevertheless, soybean breeding needs to be accelerated to meet the needs of a growing world population, to promote sustainable agriculture and to address future environmental changes. The acceleration is highly reliant on the discoveries in gene functional studies. The release of the reference soybean genome in 2010 has significantly facilitated the advance in soybean functional genomics. Here, we review the research progress in soybean omics (genomics, transcriptomics, epigenomics and proteomics), germplasm development (germplasm resources and databases), gene discovery (genes that are responsible for important soybean traits including yield, flowering and maturity, seed quality, stress resistance, nodulation and domestication) and transformation technology during the past decade. At the end, we also briefly discuss current challenges and future directions.