Reference Simulations of Noncanonical Nucleic Acids with Different χ Variants of the AMBER Force Field: Quadruplex DNA, Quadruplex RNA, and Z-DNAMiroslav Krepl, Jiřı́ Šponer, Marie Zgarbová et al.|Journal of Chemical Theory and Computation|2012Cited by 249
Molecular Dynamics Simulations of Nucleic Acids. From Tetranucleotides to the RibosomeJiřı́ Šponer, Michal Otyepka, Pavel Banáš et al.|The Journal of Physical Chemistry Letters|2014Cited by 171
Folding of guanine quadruplex molecules–funnel-like mechanism or kinetic partitioning? An overview from MD simulation studiesJiřı́ Šponer, Michal Otyepka, Pavel Banáš et al.|Biochimica et Biophysica Acta (BBA) - General Subjects|2016Cited by 125
Can We Execute Stable Microsecond-Scale Atomistic Simulations of Protein–RNA Complexes?Miroslav Krepl, Jiřı́ Šponer, Marek Havrila et al.|Journal of Chemical Theory and Computation|2015Cited by 75
Effect of Monovalent Ion Parameters on Molecular Dynamics Simulations of G-QuadruplexesMarek Havrila, Jiřı́ Šponer, Petr Stadlbauer et al.|Journal of Chemical Theory and Computation|2017Cited by 64