Network comparison and the within-ensemble graph distanceHarrison Hartle, Brennan Klein, Stefan McCabe et al.|Proceedings of the Royal Society A Mathematical Physical and Engineering Sciences|2020 Quantifying the differences between networks is a challenging and ever-present problem in network science. In recent years, a multitude of diverse, ad hoc solutions to this problem have been introduced. Here, we propose that simple and well-understood ensembles of random networks—such as Erdős–Rényi graphs, random geometric graphs, Watts–Strogatz graphs, the configuration model and preferential attachment networks—are natural benchmarks for network comparison methods. Moreover, we show that the expected distance between two networks independently sampled from a generative model is a useful property that encapsulates many key features of that model. To illustrate our results, we calculate this within-ensemble graph distance and related quantities for classic network models (and several parameterizations thereof) using 20 distance measures commonly used to compare graphs. The within-ensemble graph distance provides a new framework for developers of graph distances to better understand their creations and for practitioners to better choose an appropriate tool for their particular task.
netrd: A library for network reconstruction and graph distancesStefan McCabe, Leo Torres, Timothy LaRock et al.|The Journal of Open Source Software|2021 . This field is built around the idea that an increased understanding of the complex structural properties of a variety systems will allow us to better observe, predict, and even control the behavior of these systems.
Classical Information Theory of NetworksFilippo Radicchi, Krioukov, Dimitri, Harrison Hartle et al.|IUScholarWorks Open (Indiana University)|2020 Existing information-theoretic frameworks based on maximum entropy network ensembles are not able to explain the emergence of heterogeneity in complex networks. Here, we fill this gap of knowledge by developing a classical framework for networks based on finding an optimal trade-off between the information content of a compressed representation of the ensemble and the information content of the actual network ensemble. In this way not only we introduce a novel classical network ensemble satisfying a set of soft constraints but we are also able to calculate the optimal distribution of the constraints. We show that for the classical network ensemble in which the only constraints are the expected degrees a power-law degree distribution is optimal. Also, we study spatially embedded networks finding that the interactions between nodes naturally lead to non-uniform spread of nodes in the space, with pairs of nodes at a given distance not necessarily obeying a power-law distribution. The pertinent features of real-world air transportation networks are well described by the proposed framework.
Run-Up of Long Waves in Piecewise Sloping U-Shaped BaysDalton Anderson, M. W. Harris, Harrison Hartle et al.|Pure and Applied Geophysics|2017 Dynamic hidden-variable network modelsModels of complex networks often incorporate node-intrinsic properties abstracted as hidden variables. The probability of connections in the network is then a function of these variables. Real-world networks evolve over time and many exhibit dynamics of node characteristics as well as of linking structure. Here we introduce and study natural temporal extensions of static hidden-variable network models with stochastic dynamics of hidden variables and links. The dynamics is controlled by two parameters: one that tunes the rate of change of hidden variables and another that tunes the rate at which node pairs reevaluate their connections given the current values of hidden variables. Snapshots of networks in the dynamic models are equivalent to networks generated by the static models only if the link reevaluation rate is sufficiently larger than the rate of hidden-variable dynamics or if an additional mechanism is added whereby links actively respond to changes in hidden variables. Otherwise, links are out of equilibrium with respect to hidden variables and network snapshots exhibit structural deviations from the static models. We examine the level of structural persistence in the considered models and quantify deviations from staticlike behavior. We explore temporal versions of popular static models with community structure, latent geometry, and degree heterogeneity. While we do not attempt to directly model real networks, we comment on interesting qualitative resemblances to real systems. In particular, we speculate that links in some real networks are out of equilibrium with respect to hidden variables, partially explaining the presence of long-ranged links in geometrically embedded systems and intergroup connectivity in modular systems. We also discuss possible extensions, generalizations, and applications of the introduced class of dynamic network models.