J

Joes Staal

Utrecht University

ORCID: 0000-0002-4410-8318

Publishes on Medical Image Segmentation Techniques, Retinal Diseases and Treatments, Retinal Imaging and Analysis. 17 papers and 6.2k citations.

17Publications
6.2kTotal Citations

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Top publicationsby citations

Ridge-Based Vessel Segmentation in Color Images of the Retina
Joes Staal, Michael D. Abràmoff, Meindert Niemeijer et al.|IEEE Transactions on Medical Imaging|2004
Cited by 4.1k

A method is presented for automated segmentation of vessels in two-dimensional color images of the retina. This method can be used in computer analyses of retinal images, e.g., in automated screening for diabetic retinopathy. The system is based on extraction of image ridges, which coincide approximately with vessel centerlines. The ridges are used to compose primitives in the form of line elements. With the line elements an image is partitioned into patches by assigning each image pixel to the closest line element. Every line element constitutes a local coordinate frame for its corresponding patch. For every pixel, feature vectors are computed that make use of properties of the patches and the line elements. The feature vectors are classified using a kappaNN-classifier and sequential forward feature selection. The algorithm was tested on a database consisting of 40 manually labeled images. The method achieves an area under the receiver operating characteristic curve of 0.952. The method is compared with two recently published rule-based methods of Hoover et al. and Jiang et al. The results show that our method is significantly better than the two rule-based methods (p < 0.01). The accuracy of our method is 0.944 versus 0.947 for a second observer.

Comparative study of retinal vessel segmentation methods on a new publicly available database
Meindert Niemeijer, Joes Staal, Bram van Ginneken et al.|Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE|2004
Cited by 795

In this work we compare the performance of a number of vessel segmentation algorithms on a newly constructed retinal vessel image database. Retinal vessel segmentation is important for the detection of numerous eye diseases and plays an important role in automatic retinal disease screening systems. A large number of methods for retinal vessel segmentation have been published, yet an evaluation of these methods on a common database of screening images has not been performed. To compare the performance of retinal vessel segmentation methods we have constructed a large database of retinal images. The database contains forty images in which the vessel trees have been manually segmented. For twenty of those forty images a second independent manual segmentation is available. This allows for a comparison between the performance of automatic methods and the performance of a human observer. The database is available to the research community. Interested researchers are encouraged to upload their segmentation results to our website (http://www.isi.uu.nl/Research/Databases). The performance of five different algorithms has been compared. Four of these methods have been implemented as described in the literature. The fifth pixel classification based method was developed specifically for the segmentation of retinal vessels and is the only supervised method in this test. We define the segmentation accuracy with respect to our gold standard as the performance measure. Results show that the pixel classification method performs best, but the second observer still performs significantly better.

Active shape model segmentation with optimal features
Bram van Ginneken, Alejandro F. Frangi, Joes Staal et al.|IEEE Transactions on Medical Imaging|2002
Cited by 525

An active shape model segmentation scheme is presented that is steered by optimal local features, contrary to normalized first order derivative profiles, as in the original formulation [Cootes and Taylor, 1995, 1999, and 2001]. A nonlinear kNN-classifier is used, instead of the linear Mahalanobis distance, to find optimal displacements for landmarks. For each of the landmarks that describe the shape, at each resolution level taken into account during the segmentation optimization procedure, a distinct set of optimal features is determined. The selection of features is automatic, using the training images and sequential feature forward and backward selection. The new approach is tested on synthetic data and in four medical segmentation tasks: segmenting the right and left lung fields in a database of 230 chest radiographs, and segmenting the cerebellum and corpus callosum in a database of 90 slices from MRI brain images. In all cases, the new method produces significantly better results in terms of an overlap error measure (p < 0.001 using a paired T-test) than the original active shape model scheme.

Automatic detection of red lesions in digital color fundus photographs
Meindert Niemeijer, Bram van Ginneken, Joes Staal et al.|IEEE Transactions on Medical Imaging|2005
Cited by 498

The robust detection of red lesions in digital color fundus photographs is a critical step in the development of automated screening systems for diabetic retinopathy. In this paper, a novel red lesion detection method is presented based on a hybrid approach, combining prior works by Spencer et al. (1996) and Frame et al. (1998) with two important new contributions. The first contribution is a new red lesion candidate detection system based on pixel classification. Using this technique, vasculature and red lesions are separated from the background of the image. After removal of the connected vasculature the remaining objects are considered possible red lesions. Second, an extensive number of new features are added to those proposed by Spencer-Frame. The detected candidate objects are classified using all features and a k-nearest neighbor classifier. An extensive evaluation was performed on a test set composed of images representative of those normally found in a screening set. When determining whether an image contains red lesions the system achieves a sensitivity of 100% at a specificity of 87%. The method is compared with several different automatic systems and is shown to outperform them all. Performance is close to that of a human expert examining the images for the presence of red lesions.