Interpretable dimensionality reduction of single cell transcriptome data with deep generative modelsJiarui Ding, Sohrab P. Shah, Anne Condon|Nature Communications|2018Cited by 382
HotKnots: Heuristic prediction of RNA secondary structures including pseudoknotsJihong Ren, Holger H. Hoos, Baharak Rastegari et al.|RNA|2005Cited by 287
RNA STRAND: The RNA Secondary Structure and Statistical Analysis DatabaseMirela Andronescu, Anne Condon, Holger H. Hoos et al.|BMC Bioinformatics|2008Cited by 287
Efficient parameter estimation for RNA secondary structure predictionMirela Andronescu, Kevin P. Murphy, David H. Mathews et al.|Bioinformatics|2007Cited by 248
Feature-based classifiers for somatic mutation detection in tumour–normal paired sequencing dataJiarui Ding, Sohrab P. Shah, Arusha Oloumi et al.|Bioinformatics|2011Cited by 154