Performance impact and interplay of SSD parallelism through advanced commands, allocation strategy and data granularityWith the development of the NAND-Flash technology, NAND-Flash based Solid-State Disk (SSD) has been attracting a great deal of attention from both industry and academia. While a range of SSD research topics, from interface techniques to buffer management and Flash Translation Layer (FTL), from perfor-mance to endurance and energy efficiency, have been extensively studied in the literature, the SSD being studied was by and large treated as a grey or black box in that many of the internal features such as advanced commands, physical-page allocation schemes and data granularity are hidden or assumed away. We argue that, based on our experimental study, it is these internal features and their interplay that will help provide the missing but significant insights to designing high-performance and high-endurance SSDs. In this paper, we use our highly accurate and multi-tiered SSD
Cerebrospinal Fluid Inflammatory Cytokine Aberrations in Alzheimer's Disease, Parkinson's Disease and Amyotrophic Lateral Sclerosis: A Systematic Review and Meta-AnalysisXi Chen, Yang Hu, Zong-Ze Cao et al.|Frontiers in Immunology|2018 It has been suggested that cytokine-mediated inflammation plays a key role for the onset and/or development of neurodegenerative diseases including Alzheimer's disease (AD), Parkinson's disease (PD) and Amyotrophic lateral sclerosis (ALS). However, clinical studies have yielded inconsistent results for the aberrant cytokine levels in circulation of patients with AD, PD, and ALS. Previous studies have used meta-analysis to address the inconsistent data for blood cytokine levels in the patients with AD, PD, and ALS. Here, we performed a systemic review of cerebrospinal fluid inflammatory cytokine data in patients with AD, PD and ALS, and sought to quantitatively summarize the CSF inflammatory cytokine data with a meta-analytical technique. The systematic search from Pubmed and Web of Science identified 71 articles with 2629 patients and 2049 controls for the meta-analysis. Random-effects meta-analysis demonstrated that CSF TGF-β, MCP-1, and YKL-40 levels were significantly elevated in AD patients when compared with controls. In addition, patients with PD had heightened levels of TGF-β1, IL-6, and IL-1β in CSF. Furthermore, G-CSF, IL-2, IL-15, IL-17, MCP-1, MIP-1α, TNF-α, and VEGF levels were significantly increased in patients with ALS as compared with controls. Taken together, these results not only strengthen the clinical evidence that neurodegenerative diseases are accompanied by the increased inflammatory response, but also reveal the unique inflammatory response profile in the central nervous system of patients with AD, PD and ALS. Given the robust associations between some cytokines and neurodegenerative diseases found in this meta-analysis, CSF inflammatory cytokines may be used as biomarkers for these diseases in the future.
Exploring and Exploiting the Multilevel Parallelism Inside SSDs for Improved Performance and EnduranceYang Hu, Hong Jiang, Dan Feng et al.|IEEE Transactions on Computers|2012 Given the multilevel internal SSD parallelism at the different four levels: channel-level, chip-level, die-level, and plane-level, how to exploit these levels of parallelism will directly and significantly impact the performance and endurance of SSDs, which is in turn primarily determined by three internal factors, namely, advanced commands, allocation schemes, and the priority order of exploiting the four levels of parallelism. In this paper, we analyze these internal factors to characterize their impacts, interplay, and parallelism for the purpose of performance and endurance enhancement of SSDs through an in-depth experimental study. We come to the following key conclusions: 1) Different advanced commands provided by Flash manufacturers exploit different levels of parallelism inside SSDs, where they can either improve or degrade the SSD performance and endurance depending on how they are used; 2) Different physical-page allocation schemes employ different advanced commands and exploit different levels of parallelism inside SSDs, giving rise to different performance and endurance impacts; 3) The priority order of using the four levels of parallelism has the most significant performance and endurance impact among the three internal factors. The optimal priority order of using the four levels of parallelism in SSDs is found to be: 1) the channel-level parallelism; 2) the die-level parallelism; 3) the plane-level parallelism; and 4) the chip-level parallelism.
Increased peripheral blood inflammatory cytokine levels in amyotrophic lateral sclerosis: a meta-analysis studyYang Hu, Chang Cao, Xiao‐Yan Qin et al.|Scientific Reports|2017 Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease with poorly understood etiology. Increasing evidence suggest that inflammation may play a critical role in the pathogenesis of ALS. Several studies have demonstrated altered levels of blood cytokines in ALS, but results were inconsistent. Therefore, we did a systematic review of studies comparing blood inflammatory cytokines between ALS patients and control subjects, and quantitatively combined the clinical data with a meta-analysis. The systematic review of Pubmed and Web of Science identified 25 studies encompassing 812 ALS patients and 639 control subjects. Random-effects meta-analysis demonstrated that blood tumor necrosis factor-α (TNF; Hedges' g = 0.655; p = 0.001), TNF receptor 1 (Hedges' g = 0.741; p < 0.001), interleukin 6 (IL-6; Hedges' g = 0.25; p = 0.005), IL-1β (Hedges' g = 0.296; p = 0.038), IL-8 (Hedges' g = 0.449; p < 0.001) and vascular endothelial growth factor (Hedges' g = 0.891; p = 0.003) levels were significantly elevated in patients with ALS compared with control subjects. These results substantially enhance our knowledge of the inflammatory response in ALS, and peripheral blood inflammatory cytokines may be used as diagnostic biomarkers for ALS in the future.
Genome-Wide, Integrative Analysis Implicates Exosome-Derived MicroRNA Dysregulation in SchizophreniaYang Du, Yun Yu, Yang Hu et al.|Schizophrenia Bulletin|2018 Genetic variants conferring risk for schizophrenia (SCZ) have been extensively studied, but the role of posttranscriptional mechanisms in SCZ is not well studied. Here we performed the first genome-wide microRNA (miRNA) expression profiling in serum-derived exosome from 49 first-episode, drug-free SCZ patients and 46 controls and identified miRNAs and co-regulated modules that were perturbed in SCZ. Putative targets of these SCZ-affected miRNAs were enriched strongly for genes that have been implicated in protein glycosylation and were also related to neurotransmitter receptor and dendrite (spine) development. We validated several differentially expressed blood exosomal miRNAs in 100 SCZ patients as compared with 100 controls by quantitative reverse transcription-polymerase chain reaction. The potential regulatory relationships between several SCZ-affected miRNAs and their putative target genes were also validated. These include hsa-miR-206, which is the most upregulated miRNA in the blood exosomes of SCZ patients and that previously reported to regulate brain-derived neurotrophic factor expression, which we showed reduced mRNA and protein levels in the blood of SCZ patients. In addition, we found 11 miRNAs in blood exosomes from the miRNA sequence data that can be used to classify samples from SCZ patients and control subjects with close to 90% accuracy in the training samples, and approximately 75% accuracy in the testing samples. Our findings support a role for exosomal miRNA dysregulation in SCZ pathophysiology and provide a rich data set and framework for future analyses of miRNAs in the disease, and our data also suggest that blood exosomal miRNAs are promising biomarkers for SCZ.