CD1a-Mediated Presentation of Canonical Microbial Peptides to T Cells

Bruno Jorge De Andrade Silva(University of California, Los Angeles), Annemieke de Jong(Columbia University), Linda A. Fischbacher(Colorado State University), Maria Angela M. Marques(Colorado State University), Annaliza Legaspi(University of California, Los Angeles), Adam Shahine(Australian Regenerative Medicine Institute), Jade Kollmorgen(Australian Regenerative Medicine Institute), P. A. Sieling(NantWorks (United States)), Aaron Choi(University of California, Los Angeles), Hee Jin Kim(Colorado State University), Carlos Adriano Matos e Silva(Colorado State University), Kristofor J. Webb(Colorado State University), Jason Bradshaw(Colorado State University), P Brennan(Colorado State University), Alina Marusina(University of California, Davis), Khiem A. Tran(University of California, Davis), Euzenir Nunes Sarno(Fundação Oswaldo Cruz), Roberta Olmo Pinheiro(Fundação Oswaldo Cruz), Dirk M. Zajonc(La Jolla Institute for Immunology), D. Branch Moody(Brigham and Women's Hospital), Kayvan R. Niazi(World Molecular Imaging Society), Emanual Maverakis(University of California, Davis), Alessandro Sette(La Jolla Institute for Immunology), Jamie Rossjohn(Australian Regenerative Medicine Institute), Maria T Ochoa(University of Southern California), John T. Belisle(Colorado State University), Robert L. Modlin(University of California, Los Angeles)
bioRxiv (Cold Spring Harbor Laboratory)
May 9, 2026
Cited by 0Open Access
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Abstract

SUMMARY Langerhans cells express the nonpolymorphic antigen-presenting molecule CD1a, positioning them as contributors to host immunity against Mycobacterium leprae in human leprosy. CD1a was originally shown to present non-canonical lipopeptide antigens such as dideoxymycobactin and chemically diverse hydrophobic ligands. Here, we generated CD4⁺ T cell lines from leprosy lesions that recognized M. leprae in a CD1a-restricted manner. Unexpectedly, antigen recognition was protease-sensitive, prompting biochemical purification that identified two microbial protein antigens: LppX, a 25-kDa lipoglycoprotein, and Ag85A, a 30-kDa secreted protein with no known lipid modification. Recombinant proteins activated the corresponding T cell lines in a CD1a-dependent manner. Epitope mapping identified 12-mer peptides that fully reconstituted antigenicity, were conserved between M. leprae and M. tuberculosis , and elicited robust, dose-dependent IFN-γ production and T cell proliferation, establishing that DNA-encoded, ribosomally translated peptides serve as CD1a-restricted cognate antigens. Biochemical analyses showed peptide binding to CD1a, supported by isoelectric focusing and surface plasmon resonance ( K D ∼75 μM for Ag85A). CD1a–peptide tetramers specifically stained cognate T cells, soluble CD1a was sufficient to present peptide antigen, and transfer of the LppX-specific TCR into naïve T cells restored antigen responsiveness. Using CD1a–peptide tetramers, we identified antigen-specific T cells enriched in patients undergoing reversal reactions compared with patients with lepromatous leprosy and healthy donors. The CD1a-restricted T cell lines secreted IFN-γ and IL-26, cytokines with established antimicrobial activity. Together, these findings demonstrate that CD1a can present canonical microbial peptides as part of a cell-mediated immune response in leprosy, extending the known spectrum of CD1a ligands. Because CD1a is nonpolymorphic and presents antigens to antimicrobial T cells, CD1a–peptide complexes may provide a broadly applicable platform for studying, detecting, and potentially targeting mycobacterial immunity.


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