Rewiring endogenous genes in CAR T cells for tumour-restricted payload delivery

Amanda X. Y. Chen(Peter MacCallum Cancer Centre), Kah Min Yap(Peter MacCallum Cancer Centre), Joelle S. Kim(The University of Melbourne), Kevin Sek(The University of Melbourne), Yukuan Huang(The University of Melbourne), Phoebe Dunbar(The University of Melbourne), Volker Wiebking(Stanford University), Jesse Armitage(The Kids Research Institute Australia), Isabelle Munoz(The University of Melbourne), Kirsten L. Todd(The University of Melbourne), Emily B. Derrick(The University of Melbourne), Dat Quoc Nguyen(The University of Melbourne), Junming Tong(The University of Melbourne), Cheok Weng Chan(The University of Melbourne), Thang X. Hoang(The University of Melbourne), Katherine M. Audsley(The University of Melbourne), Marit J van Elsas(The University of Melbourne), Jim Middelburg(The University of Melbourne), Joel N. Lee(The University of Melbourne), Maria N. de Menezes(The University of Melbourne), Thomas Cole(The University of Melbourne), Jasmine Li(The University of Melbourne), C. Scheffler(The University of Melbourne), Andrew M. Scott(The University of Melbourne), Laura K. Mackay(The University of Melbourne), Jason Waithman(The Kids Research Institute Australia), Jane Oliaro(The University of Melbourne), Simon J. Harrison(The University of Melbourne), Ian A. Parish(The University of Melbourne), Junyun Lai(The University of Melbourne), Matthew H. Porteus(Stanford University), Imran G. House(The University of Melbourne), Phillip K. Darcy(Peter MacCallum Cancer Centre), Paul A. Beavis(Peter MacCallum Cancer Centre)
Nature
July 2, 2025
Cited by 54Open Access
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Abstract

The efficacy of chimeric antigen receptor (CAR) T cell therapy in solid tumours is limited by immunosuppression and antigen heterogeneity1–3. To overcome these barriers, ‘armoured’ CAR T cells, which secrete proinflammatory cytokines, have been developed4. However, their clinical application has been limited because of toxicity related to peripheral expression of the armouring transgene5. Here, we have developed a CRISPR knock-in strategy that leverages the regulatory mechanisms of endogenous genes to drive transgene expression in a tumour-localized manner. By screening endogenous genes with tumour-restricted expression, we have identified the NR4A2 and RGS16 promoters as promising candidates to support the delivery of cytokines such as IL-12 and IL-2 directly to the tumour site, leading to enhanced antitumour efficacy and long-term survival of mice in both syngeneic and xenogeneic models. This effect was concomitant with improved CAR T cell polyfunctionality, activation of endogenous antitumour immunity and a favourable safety profile, and was applicable in CAR T cells from patients. A CRISPR knock-in strategy that uses endogenous gene regulatory mechanisms can engineer ‘armoured’ CAR T cells that secrete proinflammatory cytokines directly within a tumour without causing toxicity, leading to prolonged survival in mice.


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