Modulation of FGF pathway signaling and vascular differentiation using designed oligomeric assemblies

Natasha I. Edman(University of Washington), Ashish Phal(University of Washington), Rachel L. Redler(New York University), Thomas Schlichthaerle(University of Washington), Sanjay Srivatsan(University of Washington), Devon Duron Ehnes(University of Washington), Ali Etemadi(University of Washington), Seong Jin An(Yale University), Andrew Favor(University of Washington), Zhe Li(University of Washington), Florian Praetorius(University of Washington), Max Gordon(University of Washington), Thomas L. Vincent(University of Washington), Silvia Marchianò(University of Washington), Leslie P. Blakely(University of Washington), Chuwei Lin(University of Washington), Wei Yang(University of Washington), Brian Coventry(University of Washington), Derrick R. Hicks(University of Washington), Longxing Cao(University of Washington), Neville P. Bethel(Howard Hughes Medical Institute), Piper Heine(University of Washington), Analisa Murray(University of Washington), Stacey Gerben(University of Washington), Lauren Carter(University of Washington), Marcos C. Miranda(University of Washington), Babak Negahdari(Tehran University of Medical Sciences), Sangwon Lee(Yale University), Cole Trapnell(University of Washington), Ying Zheng(University of Washington), Charles E. Murry(University of Washington), Devin K. Schweppe(University of Washington), Benjamin Freedman(University of Washington), Lance Stewart(University of Washington), Damian C. Ekiert(New York University), Joseph Schlessinger(Yale University), Jay Shendure(Howard Hughes Medical Institute), Gira Bhabha(New York University), Hannele Ruohola‐Baker(University of Washington), David Baker(Howard Hughes Medical Institute)
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Abstract

Many growth factors and cytokines signal by binding to the extracellular domains of their receptors and driving association and transphosphorylation of the receptor intracellular tyrosine kinase domains, initiating downstream signaling cascades. To enable systematic exploration of how receptor valency and geometry affect signaling outcomes, we designed cyclic homo-oligomers with up to 8 subunits using repeat protein building blocks that can be modularly extended. By incorporating a de novo-designed fibroblast growth factor receptor (FGFR)-binding module into these scaffolds, we generated a series of synthetic signaling ligands that exhibit potent valency- and geometry-dependent Ca2+ release and mitogen-activated protein kinase (MAPK) pathway activation. The high specificity of the designed agonists reveals distinct roles for two FGFR splice variants in driving arterial endothelium and perivascular cell fates during early vascular development. Our designed modular assemblies should be broadly useful for unraveling the complexities of signaling in key developmental transitions and for developing future therapeutic applications.


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