Acquisition of epithelial plasticity in human chronic liver disease

Christopher Gribben(Wellcome/MRC Cambridge Stem Cell Institute), Vasileios Galanakis(Wellcome/MRC Cambridge Stem Cell Institute), Alexander Calderwood(Wellcome/MRC Cambridge Stem Cell Institute), Eleanor C Williams(Wellcome/MRC Cambridge Stem Cell Institute), Ruben Chazarra-Gil(Wellcome/MRC Cambridge Stem Cell Institute), Miguel Larraz(Wellcome/MRC Cambridge Stem Cell Institute), Carla Frau(Berlin Institute of Health at Charité - Universitätsmedizin Berlin), Tobias Puengel(Berlin Institute of Health at Charité - Universitätsmedizin Berlin), Adrien Guillot(Charité - Universitätsmedizin Berlin), Foad J. Rouhani(The Francis Crick Institute), Krishnaa T. Mahbubani(University of Cambridge), Edmund Godfrey(Addenbrooke's Hospital), Susan E. Davies(Cambridge University Hospitals NHS Foundation Trust), Emmanouil Athanasiadis(Biomedical Research Foundation of the Academy of Athens), Kourosh Saeb‐Parsy(University of Cambridge), Frank Tacke(Charité - Universitätsmedizin Berlin), Michael Allison(Cambridge University Hospitals NHS Foundation Trust), Irina Mohorianu(Wellcome/MRC Cambridge Stem Cell Institute), Ludovic Vallier(Wellcome/MRC Cambridge Stem Cell Institute)
Nature
May 22, 2024
Cited by 112Open Access
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Abstract

, but technical challenges and ethical aspects are limiting the validation of these results in humans. We decided to address this difficulty with respect to the liver. This organ displays the remarkable ability to regenerate after acute injury, although liver regeneration in the context of recurring injury remains to be fully demonstrated. Here we performed single-nucleus RNA sequencing (snRNA-seq) on 47 liver biopsies from patients with different stages of metabolic dysfunction-associated steatotic liver disease to establish a cellular map of the liver during disease progression. We then combined these single-cell-level data with advanced 3D imaging to reveal profound changes in the liver architecture. Hepatocytes lose their zonation and considerable reorganization of the biliary tree takes place. More importantly, our study uncovers transdifferentiation events that occur between hepatocytes and cholangiocytes without the presence of adult stem cells or developmental progenitor activation. Detailed analyses and functional validations using cholangiocyte organoids confirm the importance of the PI3K-AKT-mTOR pathway in this process, thereby connecting this acquisition of plasticity to insulin signalling. Together, our data indicate that chronic injury creates an environment that induces cellular plasticity in human organs, and understanding the underlying mechanisms of this process could open new therapeutic avenues in the management of chronic diseases.


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