microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data
Simone Zuffa(University of California San Diego), Robin Schmid(University of California San Diego), Anelize Bauermeister(Universidade de São Paulo), Paulo Wender Portal Gomes(University of California San Diego), Andrés Mauricio Caraballo‐Rodríguez(University of California San Diego), Yasin El Abiead(University of California San Diego), Allegra T. Aron(University of Denver), Emily C. Gentry(Virginia Tech), Jasmine Zemlin(University of California San Diego), Michael J. Meehan(University of California San Diego), Nicole E. Avalon(Scripps Institution of Oceanography), Robert H. Cichewicz(University of Oklahoma), Ekaterina Buzun(University of California San Diego), Marvic Carrillo Terrazas(University of California San Diego), Chia-Yun Hsu(University of California San Diego), Renee Oles(University of California San Diego), Adriana Vasquez Ayala(University of California San Diego), Jiaqi Zhao(University of California San Diego), Hiutung Chu(University of San Diego), Mirte C. M. Kuijpers(University of California San Diego), Sara L. Jackrel(University of California San Diego), Fidele Tugizimana(University of Johannesburg), Lerato Nephali(University of Johannesburg), Ian A. Dubery(University of Johannesburg), Ntakadzeni Edwin Madala(University of Venda), Eduarda Antunes Moreira(Universidade de São Paulo), Letícia V. Costa‐Lotufo(Universidade de São Paulo), Norberto Peporine Lopes(Universidade de São Paulo), Paula Rezende‐Teixeira(Universidade de São Paulo), Paula C. Jimenez(Universidade Federal de São Paulo), Bipin Rimal(Pennsylvania State University), Andrew D. Patterson(Pennsylvania State University), Matthew F. Traxler(University of California, Berkeley), Rita de Cássia Pessotti(University of California, Berkeley), Daniel Alvarado-Villalobos(Universidad de Costa Rica), Giselle Tamayo‐Castillo(Universidad de Costa Rica), Priscila Chaverrí(Universidad de Costa Rica), Efraín Escudero‐Leyva(Universidad de Costa Rica), Luis-Manuel Quirós-Guerrero(University of Geneva), Alexandre Bory(University of Geneva), Juliette Joubert(University of Geneva), Adriano Rutz(University of Geneva), Jean‐Luc Wolfender(University of Geneva), Pierre‐Marie Allard(University of Geneva), Andreas Sichert(ETH Zurich), Sammy Pontrelli(ETH Zurich), Benjamin Pullman(University of California San Diego), Nuno Bandeira(University of California San Diego), William H. Gerwick(Scripps Institution of Oceanography), Katia Gindro(Agroscope), Josep Massana‐Codina(Agroscope), Berenike Wagner(University of Tübingen), Karl Forchhammer(University of Tübingen), Daniel Petras(University of Tübingen), Nicole Aiosa(Georgia Institute of Technology), Neha Garg(Georgia Institute of Technology), Manuel Liebeke(Hochschule für Angewandte Wissenschaften Kiel), Patric Bourceau(Max Planck Institute for Marine Microbiology), Kyo Bin Kang(Sookmyung Women's University), Henna Gadhavi(King's College London), Luiz Pedro S. de Carvalho(Scripps Research Institute), Mariana Silva dos Santos(The Francis Crick Institute), Alicia Isabel Pérez‐Lorente(Consejo Superior de Investigaciones Científicas), Carlos Molina‐Santiago(Consejo Superior de Investigaciones Científicas), Diego Romero(Consejo Superior de Investigaciones Científicas), Raimo Franke(Helmholtz Centre for Infection Research), Mark Brönstrup(German Center for Infection Research), Arturo Vera Ponce de León(Norwegian University of Life Sciences), Phillip B. Pope(Norwegian University of Life Sciences), Sabina Leanti La Rosa(Norwegian University of Life Sciences), Giorgia La Barbera(University of Copenhagen), Henrik M. Roager(University of Copenhagen), Martin Frederik Laursen(Technical University of Denmark), Fabian Hammerle(Universität Innsbruck), Bianka Siewert(Universität Innsbruck), Ursula Peintner(Universität Innsbruck), Cuauhtémoc Licona‐Cassani(Tecnológico de Monterrey), Lorena Rodríguez-Orduña(Tecnológico de Monterrey), Evelyn Rampler(University of Vienna), Felina Hildebrand(University of Vienna), Gunda Koellensperger(University of Vienna), Harald Schoeny(University of Vienna), Katharina Hohenwallner(University of Vienna), Lisa Panzenboeck(University of Vienna), Rachel Gregor(Massachusetts Institute of Technology), Ellis C. O’Neill(University of Nottingham), Eve Tallulah Roxborough(University of Nottingham), Jane Odoi(University of Nottingham), Nicole J. Bale(Royal Netherlands Institute for Sea Research), Su Ding(Royal Netherlands Institute for Sea Research), Jaap S. Sinninghe Damsté(Royal Netherlands Institute for Sea Research), Xue Li Guan(Nanyang Technological University), Jerry Cui(Florida State University), Kou‐San Ju(Florida State University), Denise Brentan Silva(Universidade Federal de Mato Grosso do Sul), Fernanda Motta Ribeiro Silva(Universidade Federal de Mato Grosso do Sul), Gilvan Ferreira da Silva(Brazilian Agricultural Research Corporation), Héctor H. F. Koolen(Escola Superior de Ciências da Saúde), Carlismari O. Grundmann(Universidade de São Paulo), Jason A. Clement(Baruch S. Blumberg Institute), Hosein Mohimani(Carnegie Mellon University), Kirk Broders(Agricultural Research Service), Kerry L. McPhail(Oregon State University), Sidnee E. Ober-Singleton(University of Oregon), Christopher M. Rath(Adamas Pharmaceuticals (United States)), Daniel McDonald(University of California San Diego), Rob Knight(University of California San Diego), Mingxun Wang(University of California, Riverside), Pieter C. Dorrestein(University of California San Diego)
Cited by 111Open Access
Abstract
microbeMASST, a taxonomically informed mass spectrometry (MS) search tool, tackles limited microbial metabolite annotation in untargeted metabolomics experiments. Leveraging a curated database of >60,000 microbial monocultures, users can search known and unknown MS/MS spectra and link them to their respective microbial producers via MS/MS fragmentation patterns. Identification of microbe-derived metabolites and relative producers without a priori knowledge will vastly enhance the understanding of microorganisms' role in ecology and human health.
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