Discovery and engineering of the antibody response against a prominent skin commensal

Djenet Bousbaine(Bioengineering Center), Katherine D. Bauman(Bioengineering Center), Y. Erin Chen(Bioengineering Center), Victor K. Yu(Bioengineering Center), Pranav V. Lalgudi(Stanford University), Arash Naziripour(Bioengineering Center), Alessandra Veinbachs(Bioengineering Center), Jennie Phung(Stanford University), Tam T. D. Nguyen(Bioengineering Center), Joyce M. Swenson(Bioengineering Center), Yue E. Lee(Stanford University), Alex Dimas(Bioengineering Center), Sunit Jain(Chan Zuckerberg Initiative (United States)), Xiandong Meng(Chan Zuckerberg Initiative (United States)), Thi Phuong Thao Pham(Bioengineering Center), Aishan Zhao(Bioengineering Center), Layla J. Barkal(Pulmonary Associates), Inta Gribonika(National Institutes of Health), Koen K. A. Van Rompay(University of California System), Yasmine Belkaid(National Institutes of Health), Christopher O. Barnes(Chan Zuckerberg Initiative (United States)), Michael A. Fischbach(Chan Zuckerberg Initiative (United States))
bioRxiv (Cold Spring Harbor Laboratory)
January 23, 2024
Cited by 3Open Access
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Abstract

ABSTRACT The ubiquitous skin colonist Staphylococcus epidermidis elicits a CD8 + T cell response pre-emptively, in the absence of an infection 1 . However, the scope and purpose of this anti-commensal immune program are not well defined, limiting our ability to harness it therapeutically. Here, we show that this colonist also induces a potent, durable, and specific antibody response that is conserved in humans and non-human primates. A series of S. epidermidis cell-wall mutants revealed that the cell surface protein Aap is a predominant target. By colonizing mice with a strain of S. epidermidis in which the parallel β-helix domain of Aap is replaced by tetanus toxin fragment C, we elicit a potent neutralizing antibody response that protects mice against a lethal challenge. A similar strain of S. epidermidis expressing an Aap-SpyCatcher chimera can be conjugated with recombinant immunogens; the resulting labeled commensal elicits high titers of antibody under conditions of physiologic colonization, including a robust IgA response in the nasal mucosa. Thus, immunity to a common skin colonist involves a coordinated T and B cell response, the latter of which can be redirected against pathogens as a novel form of topical vaccination.


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