Autonomous, multiproperty-driven molecular discovery: From predictions to measurements and back

Brent A. Koscher(Massachusetts Institute of Technology), Richard B. Canty(Massachusetts Institute of Technology), Matthew A. McDonald(Massachusetts Institute of Technology), Kevin P. Greenman(Massachusetts Institute of Technology), Charles J. McGill(Massachusetts Institute of Technology), Camille Bilodeau(Massachusetts Institute of Technology), Wengong Jin(Broad Institute), Haoyang Wu(Massachusetts Institute of Technology), Florence H. Vermeire(Massachusetts Institute of Technology), Brooke Jin(Massachusetts Institute of Technology), Travis Hart(Massachusetts Institute of Technology), Timothy Kulesza(Massachusetts Institute of Technology), Shih‐Cheng Li(Massachusetts Institute of Technology), Tommi Jaakkola(Massachusetts Institute of Technology), Regina Barzilay(Massachusetts Institute of Technology), Rafael Gómez‐Bombarelli(Massachusetts Institute of Technology), William H. Green(Massachusetts Institute of Technology), Klavs F. Jensen(Massachusetts Institute of Technology)
Science
December 21, 2023
Cited by 139

Abstract

A closed-loop, autonomous molecular discovery platform driven by integrated machine learning tools was developed to accelerate the design of molecules with desired properties. We demonstrated two case studies on dye-like molecules, targeting absorption wavelength, lipophilicity, and photooxidative stability. In the first study, the platform experimentally realized 294 unreported molecules across three automatic iterations of molecular design-make-test-analyze cycles while exploring the structure-function space of four rarely reported scaffolds. In each iteration, the property prediction models that guided exploration learned the structure-property space of diverse scaffold derivatives, which were realized with multistep syntheses and a variety of reactions. The second study exploited property models trained on the explored chemical space and previously reported molecules to discover nine top-performing molecules within a lightly explored structure-property space.


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