The role of APOBEC3B in lung tumor evolution and targeted cancer therapy resistance

Deborah R. Caswell(The Francis Crick Institute), Philippe Gui(University of California, San Francisco), Manasi K. Mayekar(University of California, San Francisco), Emily K. Law(University of Minnesota), Oriol Pich(The Francis Crick Institute), Chris Bailey(The Francis Crick Institute), Jesse Boumelha(The Francis Crick Institute), D. Lucas Kerr(University of California, San Francisco), Collin M. Blakely(University of California, San Francisco), Tadashi Manabe(University of California, San Francisco), Carlos Martínez‐Ruiz(Cancer Research UK), Björn Bakker(The Francis Crick Institute), Juan De Dios Palomino Villcas, Natalie I. Vokes(The University of Texas MD Anderson Cancer Center), Michelle Dietzen(The Francis Crick Institute), Mihaela Angelova(The Francis Crick Institute), Beatrice Gini(University of California, San Francisco), Whitney Tamaki(University of California, San Francisco), Paul Allegakoen(University of California, San Francisco), Wei Wu(University of California, San Francisco), Timothy J. Humpton(Glasgow Caledonian University), William Hill(The Francis Crick Institute), Mona Tomaschko(The Francis Crick Institute), Wei-Ting Lu(The Francis Crick Institute), Franziska Haderk(University of California, San Francisco), Maise Al Bakir(The Francis Crick Institute), A. Nagano(The Francis Crick Institute), Francisco Gimeno-Valiente(Cancer Research UK), Sophie de Carné Trécesson(The Francis Crick Institute), Roberto Vendramin(The Francis Crick Institute), Vittorio Barbè(The Francis Crick Institute), Miriam Mugabo(Cancer Research UK), Clare E. Weeden(The Francis Crick Institute), Andrew Rowan(The Francis Crick Institute), Caroline E. McCoach, Bruna Almeida(King's College London), Mary Green(The Francis Crick Institute), Carlos Gómez(University of California, San Francisco), Shigeki Nanjo(University of California, San Francisco), Dora Barbosa(University of California, San Francisco), Christopher Moore(The Francis Crick Institute), Joanna Przewrocka(The Francis Crick Institute), James R. Black(The Francis Crick Institute), Eva Grönroos(The Francis Crick Institute), Alejandro Suárez‐Bonnet(Royal Veterinary College), Simon L. Priestnall(Royal Veterinary College), Caroline Zverev(The Francis Crick Institute), Scott Lighterness(The Francis Crick Institute), James Cormack(The Francis Crick Institute), Victor Olivas(University of California, San Francisco), Lauren Čech(University of California, San Francisco), Trisha Andrews(University of California, San Francisco), Brandon Rule, Yuwei Jiao(Neogen Europe (United Kingdom)), Xinzhu Zhang(Neogen Europe (United Kingdom)), Paul Ashford(Institute of Structural and Molecular Biology), Cameron Durfee(The University of Texas at San Antonio Health Science Center), Subramanian Venkatesan(The Francis Crick Institute), Nuri A. Temiz(University of Minnesota), Lisa Tan(University of California, San Francisco), Lindsay K. Larson(University of Minnesota), Prokopios P. Argyris(University of Minnesota), William L. Brown(University of Minnesota), Elizabeth A. Yu(Sutter Health), Julia Rotow(Dana-Farber Cancer Institute), Udayan Guha(National Institutes of Health), Nitin Roper(National Institutes of Health), Johnny Yu(University of California, San Francisco), Rachel I. Vogel(University of Minnesota), Nicholas J. Thomas(University of California, San Francisco), Antonio Marra(European Institute of Oncology), Pier Selenica(Memorial Sloan Kettering Cancer Center), Helena A. Yu(Memorial Sloan Kettering Cancer Center), Samuel F. Bakhoum(Memorial Sloan Kettering Cancer Center), Su Kit Chew(The Francis Crick Institute), Jorge S. Reis‐Filho(Memorial Sloan Kettering Cancer Center), Mariam Jamal‐Hanjani(Royal London Hospital), Karen H. Vousden(The Francis Crick Institute), Nicholas McGranahan(Cancer Research UK), Eliezer M. Van Allen(Dana-Farber Cancer Institute), Nnennaya Kanu(Cancer Research UK), Reuben S. Harris(Howard Hughes Medical Institute), Julian Downward(The Francis Crick Institute), Trever G. Bivona(University of California, San Francisco), Charles Swanton(The Francis Crick Institute)
Nature Genetics
December 4, 2023
Cited by 85Open Access
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Abstract

In this study, the impact of the apolipoprotein B mRNA-editing catalytic subunit-like (APOBEC) enzyme APOBEC3B (A3B) on epidermal growth factor receptor (EGFR)-driven lung cancer was assessed. A3B expression in EGFR mutant (EGFRmut) non-small-cell lung cancer (NSCLC) mouse models constrained tumorigenesis, while A3B expression in tumors treated with EGFR-targeted cancer therapy was associated with treatment resistance. Analyses of human NSCLC models treated with EGFR-targeted therapy showed upregulation of A3B and revealed therapy-induced activation of nuclear factor kappa B (NF-κB) as an inducer of A3B expression. Significantly reduced viability was observed with A3B deficiency, and A3B was required for the enrichment of APOBEC mutation signatures, in targeted therapy-treated human NSCLC preclinical models. Upregulation of A3B was confirmed in patients with NSCLC treated with EGFR-targeted therapy. This study uncovers the multifaceted roles of A3B in NSCLC and identifies A3B as a potential target for more durable responses to targeted cancer therapy.


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