A foundation model for generalizable disease detection from retinal images

Yukun Zhou(University College Hospital), Mark A. Chia(Moorfields Eye Hospital NHS Foundation Trust), Siegfried K. Wagner(Moorfields Eye Hospital NHS Foundation Trust), Murat Seçkin Ayhan(Moorfields Eye Hospital NHS Foundation Trust), Dominic J. Williamson(Moorfields Eye Hospital NHS Foundation Trust), Robbert Struyven(Moorfields Eye Hospital NHS Foundation Trust), Timing Liu(Moorfields Eye Hospital NHS Foundation Trust), Moucheng Xu(University College London), Mateo Gende(Universidade da Coruña), Peter Woodward-Court(Moorfields Eye Hospital NHS Foundation Trust), Yuka Kihara(University of Washington), Naomi E. Allen(University of Oxford), John Gallacher(University of Oxford), Thomas J. Littlejohns(University of Oxford), Tariq Aslam(University of Manchester), Paul Bishop(University of Manchester), Graeme C. Black(University of Manchester), Panagiotis I. Sergouniotis(University of Manchester), Denize Atan(University of Bristol), Andrew D. Dick(University of Bristol), Cathy Williams(University of Bristol), Sarah Barman(Kingston University), Jenny H. Barrett(University of Leeds), Sarah Mackie(University of Leeds), Tasanee Braithwaite(St Thomas' Hospital), Roxana O. Carare(University of Southampton), Sarah Ennis(University of Southampton), Jane Whitney Gibson(University of Southampton), Andrew Lotery(University of Southampton), Jay Self(University of Southampton), Usha Chakravarthy(Queen's University Belfast), Ruth Hogg(Queen's University Belfast), Euan Paterson(Queen's University Belfast), Jayne V. Woodside(Queen's University Belfast), Tünde Pető(Queen's University Belfast), Gareth J. McKay(Queen's University Belfast), Bernadette McGuinness(Queen's University Belfast), Paul J. Foster(Moorfields Eye Hospital NHS Foundation Trust), Konstantinos Balaskas(Moorfields Eye Hospital NHS Foundation Trust), Anthony P. Khawaja(Moorfields Eye Hospital NHS Foundation Trust), Nikolas Pontikos(Moorfields Eye Hospital NHS Foundation Trust), Jugnoo S. Rahi(Moorfields Eye Hospital NHS Foundation Trust), Gerassimos Lascaratos(Moorfields Eye Hospital NHS Foundation Trust), Praveen J. Patel(Moorfields Eye Hospital NHS Foundation Trust), Michelle Chan(Moorfields Eye Hospital NHS Foundation Trust), Sharon Chua(Moorfields Eye Hospital NHS Foundation Trust), Alexander Day(Moorfields Eye Hospital NHS Foundation Trust), Parul Desai(Moorfields Eye Hospital NHS Foundation Trust), Cathy Egan(Moorfields Eye Hospital NHS Foundation Trust), Marcus Fruttiger(Moorfields Eye Hospital NHS Foundation Trust), David F. Garway‐Heath(Moorfields Eye Hospital NHS Foundation Trust), Alison J. Hardcastle(Moorfields Eye Hospital NHS Foundation Trust), Peng T. Khaw(Moorfields Eye Hospital NHS Foundation Trust), Tony Moore(Moorfields Eye Hospital NHS Foundation Trust), Sobha Sivaprasad(Moorfields Eye Hospital NHS Foundation Trust), Nicholas G. Strouthidis(Moorfields Eye Hospital NHS Foundation Trust), Dhanes Thomas(Moorfields Eye Hospital NHS Foundation Trust), Adnan Tufail(Moorfields Eye Hospital NHS Foundation Trust), Ananth C. Viswanathan(Moorfields Eye Hospital NHS Foundation Trust), Bal Dhillon(University of Edinburgh), Tom MacGillivray(University of Edinburgh), Cathie Sudlow(University of Edinburgh), Véronique Vitart(University of Edinburgh), Alex S. F. Doney(University of Dundee), Emanuele Trucco(University of Dundee), Jeremy A. Guggeinheim(Cardiff University), James E. Morgan(Cardiff University), Christopher J. Hammond(King's College London), Katie Williams(King's College London), Pirro G. Hysi(King's College London), Simon Harding(University of Liverpool), Yalin Zheng(University of Liverpool), Robert Luben(University College London), Philip J. Luthert(University College London), Zihan Sun(University College London), Martin McKibbin(Leeds Teaching Hospitals NHS Trust), Eoin O’Sullivan(King's College Hospital NHS Foundation Trust), Richard A. Oram(University of Exeter), Mike Weedon(University of Exeter), Christopher G. Owen(University of London), Alicja R. Rudnicka(University of London), Naveed Sattar(University of Glasgow), David Steel(Newcastle University), Irene Stratton(Gloucestershire Hospitals NHS Foundation Trust), Robyn J. Tapp(St George's, University of London), Max Yates(University of East Anglia), Axel Petzold(University College London), Savita Madhusudhan(University of Liverpool), André Altmann(University College London), Aaron Lee(University of Washington), Eric J. Topol(Scripps Institution of Oceanography), Alastair K. Denniston(University Hospitals Birmingham NHS Foundation Trust), Daniel C. Alexander(University College London), Pearse A. Keane(University College Hospital)
Nature
September 13, 2023
Cited by 808Open Access
Full Text

Abstract

Abstract Medical artificial intelligence (AI) offers great potential for recognizing signs of health conditions in retinal images and expediting the diagnosis of eye diseases and systemic disorders 1 . However, the development of AI models requires substantial annotation and models are usually task-specific with limited generalizability to different clinical applications 2 . Here, we present RETFound, a foundation model for retinal images that learns generalizable representations from unlabelled retinal images and provides a basis for label-efficient model adaptation in several applications. Specifically, RETFound is trained on 1.6 million unlabelled retinal images by means of self-supervised learning and then adapted to disease detection tasks with explicit labels. We show that adapted RETFound consistently outperforms several comparison models in the diagnosis and prognosis of sight-threatening eye diseases, as well as incident prediction of complex systemic disorders such as heart failure and myocardial infarction with fewer labelled data. RETFound provides a generalizable solution to improve model performance and alleviate the annotation workload of experts to enable broad clinical AI applications from retinal imaging.


Related Papers

No related papers found

Powered by citation graph analysis