The <i>CCP</i>4 suite: integrative software for macromolecular crystallography
Jon Agirre(University of York), Mihaela Atanasova(University of York), Haroldas Bagdonas(University of York), Charles B. Ballard(Rutherford Appleton Laboratory), Arnaud Baslé(Newcastle University), James Beilsten‐Edmands(Diamond Light Source), Rafael J. Borges(Universidade Estadual de Campinas (UNICAMP)), D. Brown(Servier (France)), J. Javier Burgos-Mármol(University of Liverpool), John M. Berrisford(European Bioinformatics Institute), Paul S. Bond(University of York), Iracema Caballero(Institut de Biologia Molecular de Barcelona), Lucrezia Catapano(MRC Laboratory of Molecular Biology), Grzegorz Chojnowski(European Molecular Biology Laboratory), Atlanta G. Cook(Wellcome Centre for Cell Biology), Kevin Cowtan(University of York), Tristan I. Croll(University of Cambridge), J.E. Debreczeni(AstraZeneca (United Kingdom)), N. E. Devenish(Diamond Light Source), E.J. Dodson(University of York), Tarik R. Drevon(Rutherford Appleton Laboratory), Paul Emsley(MRC Laboratory of Molecular Biology), Gwyndaf Evans(Diamond Light Source), Phil Evans(MRC Laboratory of Molecular Biology), Maria Fando(Rutherford Appleton Laboratory), James Foadi(University of Bath), Luis Fuentes‐Montero(Diamond Light Source), Elspeth F. Garman(University of Oxford), Markus Gerstel(Diamond Light Source), Richard J. Gildea(Diamond Light Source), Kaushik Hatti(University of Cambridge), Maarten L. Hekkelman(The Netherlands Cancer Institute), Philipp Heuser(European Molecular Biology Laboratory), Soon Wen Hoh(University of York), Michael A. Hough(University of Essex), Huw T. Jenkins(University of York), Elisabet Jiménez(Institut de Biologia Molecular de Barcelona), Robbie P. Joosten(The Netherlands Cancer Institute), Ronan M. Keegan(Rutherford Appleton Laboratory), N.H. Keep(Institute of Structural and Molecular Biology), Eugene Krissinel(Rutherford Appleton Laboratory), Petr Kolenko(Czech Academy of Sciences, Institute of Biotechnology), Oleg Kovalevskiy(Rutherford Appleton Laboratory), Victor S. Lamzin(European Molecular Biology Laboratory), David M. Lawson(John Innes Centre), Andrey A. Lebedev(Rutherford Appleton Laboratory), Andrew G. W. Leslie(MRC Laboratory of Molecular Biology), Bernhard Lohkamp(Karolinska Institutet), Fei Long(MRC Laboratory of Molecular Biology), Martin Malý(Czech Academy of Sciences, Institute of Biotechnology), Airlie J. McCoy(University of Cambridge), Stuart McNicholas(University of York), Ana Medina(Institut de Biologia Molecular de Barcelona), Claudia Millán(University of Cambridge), James W. Murray(Imperial College London), Garib N. Murshudov(MRC Laboratory of Molecular Biology), Robert A. Nicholls(MRC Laboratory of Molecular Biology), M.E.M. Noble(Newcastle University), Robert D. Oeffner(University of Cambridge), Navraj S. Pannu(Leiden University Medical Center), James M. Parkhurst(Diamond Light Source), Nicholas M. Pearce(Linköping University), Joana Pereira(SIB Swiss Institute of Bioinformatics), Anastassis Perrakis(The Netherlands Cancer Institute), Harold R. Powell(Imperial College London), Randy J. Read(University of Cambridge), Daniel J. Rigden(University of Liverpool), William Rochira(University of York), Massimo Sammito(AstraZeneca (United Kingdom)), Filomeno Sánchez Rodríguez(University of Liverpool), George M. Sheldrick(University of Göttingen), Kathryn L. Shelley(University of Washington), Felix Šimkovic(University of Liverpool), Adam J. Simpkin(Servier (France)), Pavol Skubák(Leiden University Medical Center), E. V. Sobolev(European Molecular Biology Laboratory), Roberto A. Steiner(University of Padua), Kyle Stevenson(Rutherford Appleton Laboratory), Ivo Tews(University of Southampton), Jens M. H. Thomas(University of Liverpool), Andrea Thorn(Universität Hamburg), Josep Triviño(Institut de Biologia Molecular de Barcelona), Ville Uski(Rutherford Appleton Laboratory), Isabel Usón(Institució Catalana de Recerca i Estudis Avançats), Alexei A. Vagin(University of York), Sameer Velankar(European Bioinformatics Institute), M. Vollmar(European Bioinformatics Institute), Helen Walden(University of Glasgow), David G. Waterman(Rutherford Appleton Laboratory), Keith S. Wilson(University of York), Martyn Winn(Science and Technology Facilities Council), Graeme Winter(Diamond Light Source), Marcin Wojdyr(Global Phasing (United Kingdom)), Keitaro Yamashita(MRC Laboratory of Molecular Biology)
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Abstract
The Collaborative Computational Project No. 4 (CCP4) is a UK-led international collective with a mission to develop, test, distribute and promote software for macromolecular crystallography. The CCP4 suite is a multiplatform collection of programs brought together by familiar execution routines, a set of common libraries and graphical interfaces. The CCP4 suite has experienced several considerable changes since its last reference article, involving new infrastructure, original programs and graphical interfaces. This article, which is intended as a general literature citation for the use of the CCP4 software suite in structure determination, will guide the reader through such transformations, offering a general overview of the new features and outlining future developments. As such, it aims to highlight the individual programs that comprise the suite and to provide the latest references to them for perusal by crystallographers around the world.
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