Denoising diffusion probabilistic models for 3D medical image generation

Firas Khader(Universitätsklinikum Aachen), Gustav Müller‐Franzes(Universitätsklinikum Aachen), Soroosh Tayebi Arasteh(Universitätsklinikum Aachen), Tianyu Han(RWTH Aachen University), Christoph Haarburger, Maximilian Schulze‐Hagen(Universitätsklinikum Aachen), Philipp Schad(Universitätsklinikum Aachen), Sandy Engelhardt(Heidelberg University), Bettina Baeßler(Universitätsklinikum Würzburg), Sebastian Foersch(Johannes Gutenberg University Mainz), Johannes Stegmaier(RWTH Aachen University), Christiane Kühl(Universitätsklinikum Aachen), Sven Nebelung(Universitätsklinikum Aachen), Jakob Nikolas Kather(University of Leeds), Daniel Truhn(Universitätsklinikum Aachen)
Scientific Reports
May 5, 2023
Cited by 292Open Access
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Abstract

Recent advances in computer vision have shown promising results in image generation. Diffusion probabilistic models have generated realistic images from textual input, as demonstrated by DALL-E 2, Imagen, and Stable Diffusion. However, their use in medicine, where imaging data typically comprises three-dimensional volumes, has not been systematically evaluated. Synthetic images may play a crucial role in privacy-preserving artificial intelligence and can also be used to augment small datasets. We show that diffusion probabilistic models can synthesize high-quality medical data for magnetic resonance imaging (MRI) and computed tomography (CT). For quantitative evaluation, two radiologists rated the quality of the synthesized images regarding "realistic image appearance", "anatomical correctness", and "consistency between slices". Furthermore, we demonstrate that synthetic images can be used in self-supervised pre-training and improve the performance of breast segmentation models when data is scarce (Dice scores, 0.91 [without synthetic data], 0.95 [with synthetic data]).


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