Colorectal cancer detection and treatment with engineered probiotics

Candice R. Gurbatri(Columbia University), Georgette Radford(The University of Adelaide), Laura Vrbanac(The University of Adelaide), Courtney Coker(Columbia University), Jongwon Im(Columbia University), Samuel Taylor(Cornell University), YoungUk Jang(Columbia University), Ayelet Sivan(Columbia University), Kyu Y. Rhee(Cornell University), Anas A. Saleh(Cornell University), Tiffany Chien(Columbia University), Fereshteh Zandkarimi(Columbia University), Ioana Lia(Columbia University), Tamsin R.M. Lannagan(The University of Adelaide), Tongtong Wang(South Australian Health and Medical Research Institute), Josephine A. Wright(South Australian Health and Medical Research Institute), E Thomas(The University of Adelaide), Hiroki Kobayashi(South Australian Health and Medical Research Institute), Jia Q. Ng(The University of Adelaide), Matt Lawrence(Royal Adelaide Hospital), Tarik Sammour(Royal Adelaide Hospital), Michelle Thomas(Royal Adelaide Hospital), Mark Lewis(Royal Adelaide Hospital), Lito E. Papanicolas(Flinders University), Joanne Perry(Royal Adelaide Hospital), Tracy Fitzsimmons(Royal Adelaide Hospital), Patricia Kaazan(The University of Adelaide), Amanda Lim(The University of Adelaide), Julie Marker, Cheri Ostroff(University of South Australia), Geraint B. Rogers(Flinders University), Nicholas Arpaia(Columbia University Irving Medical Center), Daniel L. Worthley(Brisbane Hand & Upper Limb Research Institute), Susan L. Woods(South Australian Health and Medical Research Institute), Tal Danino(Columbia University Irving Medical Center)
bioRxiv (Cold Spring Harbor Laboratory)
April 5, 2023
Cited by 3Open Access
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Abstract

Abstract Bioengineered probiotics enable new opportunities to improve colorectal cancer (CRC) screening, prevention and treatment strategies. Here, we demonstrate the phenomenon of selective, long-term colonization of colorectal adenomas after oral delivery of probiotic E. coli Nissle 1917 (EcN) to a genetically-engineered murine model of CRC predisposition. We show that, after oral administration, adenomas can be monitored over time by recovering EcN from stool. We also demonstrate specific colonization of EcN to solitary neoplastic lesions in an orthotopic murine model of CRC. We then exploit this neoplasia-homing property of EcN to develop early CRC intervention strategies. To detect lesions, we engineer EcN to produce a small molecule, salicylate, and demonstrate that oral delivery of this strain results in significantly increased levels of salicylate in the urine of adenoma-bearing mice, in comparison to healthy controls. We also assess EcN engineered to locally release immunotherapeutics at the neoplastic site. Oral delivery to mice bearing adenomas, reduced adenoma burden by ∼50%, with notable differences in the spatial distribution of T cell populations within diseased and healthy intestinal tissue, suggesting local induction of robust anti-tumor immunity. Together, these results support the use of EcN as an orally-delivered platform to detect disease and treat CRC through its production of screening and therapeutic molecules.


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