The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans

Robert C. Jones, Jim Karkanias, Mark A. Krasnow, Angela Oliveira Pisco, Stephen R. Quake, Julia Salzman, Nir Yosef, Bryan Bulthaup, Phillip Brown, William Harper, Marisa Hemenez, Ravikumar Ponnusamy, Ahmad Salehi, Bhavani A. Sanagavarapu, Eileen Spallino, Ksenia A. Aaron, Waldo Concepcion, James M. Gardner, Burnett S. Kelly, Nikole Neidlinger, Zifa Wang, Sheela Crasta, Saroja Kolluru, Maurizio Morri, Serena Y. Tan, Kyle J. Travaglini, Chenling Xu, Marcela Alcántara‐Hernández, Nicole Almanzar, Jane Antony, Benjamin Beyersdorf, Deviana Burhan, Kruti Calcuttawala, Matthew M. Carter, Charles K. F. Chan, Charles Chang, Stephen Chang, Alex Colville, Rebecca N. Culver, Ivana Cvijović, Gaetano D’Amato, Camille Ezran, Francisco X. Galdos, Astrid Gillich, William R. Goodyer, Yan Hang, Alyssa Hayashi, Sahar Houshdaran, Xianxi Huang, Juan C. Irwin, SoRi Jang, Júlia Vallvé-Juanico, Aaron M. Kershner, Soochi Kim, Bernhard Kiss, William Kong, Maya E. Kumar, Angera H. Kuo, Rebecca Leylek, Baoxiang Li, Gabriel B. Loeb, Wan-Jin Lu, Sruthi Mantri, Maxim Markovic, Patrick L. McAlpine, Antoine de Morrée, Karim Mrouj, Shravani Mukherjee, Tyler Muser, Patrick Neuhöfer, Thi D. Nguyen, Kimberly Perez, Ragini Phansalkar, Nazan Puluca, Zhen Qi, Poorvi Rao, Hayley M. Raquer-McKay, Nicholas Schaum, Bronwyn Scott, Bobak Seddighzadeh, Joe M. Segal, Sushmita Sen, Shaheen S. Sikandar, Sean P. Spencer, L.C. Steffes, Varun Ramanan Subramaniam, Aditi Swarup, Michael Swift, Will Van Treuren, Emily Trimm, Stefan Veizades, Sivakamasundari Vijayakumar, Kim Chi Vo, Sevahn K. Vorperian, Wanxin Wang, H Weinstein, Juliane Winkler, Ting-Hsuan Wu, Jamie Xie, Andrea R. Yung, Yue Zhang, Angela M. Detweiler, Honey Mekonen, Norma Neff, Rene Sit, Michelle Tan, Yan Jia, Gregory R. Bean, Vivek Charu, Erna Forgó, Brock A. Martin, Michael G. Ozawa, Oscar Silva, Angus Toland, Venkata N. P. Vemuri, Shaked Afik, Kyle Awayan, Olga Botvinnik, Ashley Byrne, Michelle Chen, Roozbeh Dehghannasiri, Adam Gayoso, Alejandro A. Granados, Qiqing Li, Gita Mahmoudabadi, Aaron McGeever, Julia Olivieri, Madeline Park, Neha Ravikumar, Geoff Stanley, Weilun Tan, Alexander J. Tarashansky, Rohan Vanheusden, Peter Wang, Sheng Wang, Galen Xing, Les Dethlefsen, Po-Yi Ho, Shixuan Liu, Jonathan S. Maltzman, Ross J. Metzger, Koki Sasagawa, Rahul Sinha, Hanbing Song, Bruce Wang, Steven E. Artandi, Philip A. Beachy, Michael F. Clarke, Linda C. Giudice, Franklin W. Huang, Kerwyn Casey Huang, Juliana Idoyaga, Seung K. Kim, Christin S. Kuo, Patricia K. Nguyen, Thomas A. Rando, Kristy Red‐Horse, Jeremy F. Reiter, David A. Relman, Justin L. Sonnenburg, Albert Y. Wu, Sean M. Wu, Tony Wyss‐Coray
Science
May 12, 2022
Cited by 983Open Access
Full Text

Abstract

Molecular characterization of cell types using single-cell transcriptome sequencing is revolutionizing cell biology and enabling new insights into the physiology of human organs. We created a human reference atlas comprising nearly 500,000 cells from 24 different tissues and organs, many from the same donor. This atlas enabled molecular characterization of more than 400 cell types, their distribution across tissues, and tissue-specific variation in gene expression. Using multiple tissues from a single donor enabled identification of the clonal distribution of T cells between tissues, identification of the tissue-specific mutation rate in B cells, and analysis of the cell cycle state and proliferative potential of shared cell types across tissues. Cell type-specific RNA splicing was discovered and analyzed across tissues within an individual.


Related Papers

No related papers found

Powered by citation graph analysis