PDBe: Protein Data Bank in Europe

Sameer Velankar(European Bioinformatics Institute), Younes Alhroub(European Bioinformatics Institute), C. Best(European Bioinformatics Institute), Ségolène Caboche(European Bioinformatics Institute), M.J. Conroy(European Bioinformatics Institute), Jose M Dana(European Bioinformatics Institute), Manuel A. Fernandez Montecelo(European Bioinformatics Institute), Glen van Ginkel(European Bioinformatics Institute), Adel Golovin(European Bioinformatics Institute), Swanand Gore(European Bioinformatics Institute), Aleksandras Gutmanas(European Bioinformatics Institute), P Haslam(European Bioinformatics Institute), P. Hendrickx(European Bioinformatics Institute), Egon Heuson(European Bioinformatics Institute), Miriam Hirshberg(European Bioinformatics Institute), M. John(European Bioinformatics Institute), Ingvar Lagerstedt(European Bioinformatics Institute), Saqib Mir(European Bioinformatics Institute), L. E. Newman(European Bioinformatics Institute), Tom Oldfield(European Bioinformatics Institute), Ardan Patwardhan(European Bioinformatics Institute), Luana Rinaldi(European Bioinformatics Institute), Gaurav Sahni(European Bioinformatics Institute), Eduardo Sanz‐García(European Bioinformatics Institute), Sanchayita Sen(European Bioinformatics Institute), R. Slowley(European Bioinformatics Institute), A. Suarez‐Uruena(European Bioinformatics Institute), G. Jawahar Swaminathan(European Bioinformatics Institute), Martyn F. Symmons(European Bioinformatics Institute), Wim Vranken(European Bioinformatics Institute), Michael E. Wainwright(European Bioinformatics Institute), Gerard J. Kleywegt(European Bioinformatics Institute)
Nucleic Acids Research
November 21, 2011
10.1093/nar/gkr998
Cited by 77Open Access
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Abstract

The Protein Data Bank in Europe (PDBe; pdbe.org) is a partner in the Worldwide PDB organization (wwPDB; wwpdb.org) and as such actively involved in managing the single global archive of biomacromolecular structure data, the PDB. In addition, PDBe develops tools, services and resources to make structure-related data more accessible to the biomedical community. Here we describe recently developed, extended or improved services, including an animated structure-presentation widget (PDBportfolio), a widget to graphically display the coverage of any UniProt sequence in the PDB (UniPDB), chemistry- and taxonomy-based PDB-archive browsers (PDBeXplore), and a tool for interactive visualization of NMR structures, corresponding experimental data as well as validation and analysis results (Vivaldi).

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