Ensembl 2020

Andrew Yates(European Bioinformatics Institute), Premanand Achuthan(European Bioinformatics Institute), Wasiu Akanni(European Bioinformatics Institute), James E. Allen(European Bioinformatics Institute), Jamie Allen(European Bioinformatics Institute), Jorge Álvarez-Jarreta(European Bioinformatics Institute), M Ridwan Amode(European Bioinformatics Institute), Irina M. Armean(European Bioinformatics Institute), Andrey G Azov(European Bioinformatics Institute), Ruth Bennett(European Bioinformatics Institute), Jyothish Bhai(European Bioinformatics Institute), Konstantinos Billis(European Bioinformatics Institute), Sanjay Boddu(European Bioinformatics Institute), José Carlos Marugán(European Bioinformatics Institute), Carla Cummins(European Bioinformatics Institute), Claire Davidson(European Bioinformatics Institute), Kamalkumar Dodiya(European Bioinformatics Institute), Reham Fatima(European Bioinformatics Institute), Astrid Gall(European Bioinformatics Institute), Carlos García Girón(European Bioinformatics Institute), Laurent Gil(European Bioinformatics Institute), Tiago Grego(European Bioinformatics Institute), Leanne Haggerty(European Bioinformatics Institute), Erin Haskell(European Bioinformatics Institute), Thibaut Hourlier(European Bioinformatics Institute), Osagie Izuogu(European Bioinformatics Institute), Sophie H. Janacek(European Bioinformatics Institute), Thomas Juettemann(European Bioinformatics Institute), Mike Kay(European Bioinformatics Institute), Ilias Lavidas(European Bioinformatics Institute), Anh Tuấn Lê(European Bioinformatics Institute), Diana Lemos(European Bioinformatics Institute), José M. González(European Bioinformatics Institute), Thomas Maurel(European Bioinformatics Institute), Mark D. McDowall(European Bioinformatics Institute), Aoife McMahon(European Bioinformatics Institute), Shamika Mohanan(European Bioinformatics Institute), Benjamin Moore(European Bioinformatics Institute), Michael Nuhn(European Bioinformatics Institute), Denye N Oheh(European Bioinformatics Institute), Anne Parker(European Bioinformatics Institute), Andrew Parton(European Bioinformatics Institute), Mateus Patrício(European Bioinformatics Institute), Manoj Pandian Sakthivel(European Bioinformatics Institute), Ahamed Imran Abdul Salam(European Bioinformatics Institute), Bianca M. Schmitt(European Bioinformatics Institute), Helen Schuilenburg(European Bioinformatics Institute), Dan Sheppard(European Bioinformatics Institute), Mira Sycheva(European Bioinformatics Institute), M. Szuba(European Bioinformatics Institute), Kieron Taylor(European Bioinformatics Institute), Anja Thormann(European Bioinformatics Institute), Glen Threadgold(European Bioinformatics Institute), Alessandro Vullo(European Bioinformatics Institute), Brandon Walts(European Bioinformatics Institute), Andrea Winterbottom(European Bioinformatics Institute), Amonida Zadissa(European Bioinformatics Institute), Marc Chakiachvili(European Bioinformatics Institute), Bethany Flint(European Bioinformatics Institute), Adam Frankish(European Bioinformatics Institute), Sarah Hunt(European Bioinformatics Institute), Garth R IIsley(European Bioinformatics Institute), Myrto Kostadima(European Bioinformatics Institute), Nicholas Langridge(European Bioinformatics Institute), Jane Loveland(European Bioinformatics Institute), Fergal J. Martin(European Bioinformatics Institute), Joannella Morales(European Bioinformatics Institute), Jonathan M. Mudge(European Bioinformatics Institute), Matthieu Muffato(European Bioinformatics Institute), Emily Perry(European Bioinformatics Institute), Magali Ruffier(European Bioinformatics Institute), Stephen J. Trevanion(European Bioinformatics Institute), Fiona Cunningham(European Bioinformatics Institute), Kevin Howe(European Bioinformatics Institute), Daniel R. Zerbino(European Bioinformatics Institute), Paul Flicek(European Bioinformatics Institute)
Nucleic Acids Research
October 11, 2019
10.1093/nar/gkz966
Cited by 1,221Open Access
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Abstract

The Ensembl (https://www.ensembl.org) is a system for generating and distributing genome annotation such as genes, variation, regulation and comparative genomics across the vertebrate subphylum and key model organisms. The Ensembl annotation pipeline is capable of integrating experimental and reference data from multiple providers into a single integrated resource. Here, we present 94 newly annotated and re-annotated genomes, bringing the total number of genomes offered by Ensembl to 227. This represents the single largest expansion of the resource since its inception. We also detail our continued efforts to improve human annotation, developments in our epigenome analysis and display, a new tool for imputing causal genes from genome-wide association studies and visualisation of variation within a 3D protein model. Finally, we present information on our new website. Both software and data are made available without restriction via our website, online tools platform and programmatic interfaces (available under an Apache 2.0 license) and data updates made available four times a year.

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