SARS-CoV-2 evolution during treatment of chronic infection

Steven A. Kemp(University College London), Dami A. Collier(University of Cambridge), Rawlings Datir(University of Cambridge), Isabella A.T.M. Ferreira(University of Cambridge), Salma Gayed(Cambridge University Hospitals NHS Foundation Trust), Aminu S. Jahun(University of Cambridge), Myra Hosmillo(University of Cambridge), Chloe Rees-Spear(University College London), Petra Mlčochová(University of Cambridge), Ines Ushiro Lumb(NHS Blood and Transplant), David J. Roberts(NHS Blood and Transplant), Anita Chandra(University of Cambridge), Nigel Temperton(Medway School of Pharmacy), Principal investigators, Stephen Baker(University of Cambridge), Gordon Dougan(University of Cambridge), Christoph Hess(University of Cambridge), Nathalie Kingston(University of Cambridge), Paul J. Lehner(University of Cambridge), Paul Lyons(University of Cambridge), Nicholas J. Matheson(University of Cambridge), Willem H. Owehand(University of Cambridge), Caroline Saunders(University of Cambridge), Charlotte Summers, James Thaventhiran(University of Cambridge), Mark Toshner, Michael P. Weekes(Cambridge University Hospitals NHS Foundation Trust), Ashlea Bucke(Cambridge University Hospitals NHS Foundation Trust), Jo Calder(Cambridge University Hospitals NHS Foundation Trust), Laura Canna(Cambridge University Hospitals NHS Foundation Trust), Jason Domingo(Cambridge University Hospitals NHS Foundation Trust), Anne Elmer(Cambridge University Hospitals NHS Foundation Trust), Stewart Fuller(University of Cambridge), Julie Harris(University of Cambridge), Sarah Hewitt(Cambridge University Hospitals NHS Foundation Trust), Jane Kennet(Cambridge University Hospitals NHS Foundation Trust), Sherly Jose(Cambridge University Hospitals NHS Foundation Trust), Jenny Kourampa(Cambridge University Hospitals NHS Foundation Trust), Anne Meadows(University of Cambridge), Criona O’Brien(Cambridge University Hospitals NHS Foundation Trust), Jane Price(Cambridge University Hospitals NHS Foundation Trust), Cherry Publico(Cambridge University Hospitals NHS Foundation Trust), Rebecca Rastall(Cambridge University Hospitals NHS Foundation Trust), Carla M. S. Ribeiro(Cambridge University Hospitals NHS Foundation Trust), Jane Rowlands(Cambridge University Hospitals NHS Foundation Trust), Valentina Ruffolo(Cambridge University Hospitals NHS Foundation Trust), Hugo Tordesillas(Cambridge University Hospitals NHS Foundation Trust), Sample logistics(University of Cambridge), Ben Bullman, Benjamin J. Dunmore(University of Cambridge), Stuart Fawke(University of Cambridge), Stefan Ting Graf(University of Cambridge), Josh Hodgson(University of Cambridge), Christopher Huang(University of Cambridge), Kelvin Hunter(University of Cambridge), Emma Jones(University of Cambridge), Ekaterina Legchenko(University of Cambridge), Cecilia Matara(University of Cambridge), Jennifer Martin(University of Cambridge), Federica Mescia(University of Cambridge), Ciara O’Donnell(University of Cambridge), Linda Pointon(University of Cambridge), Nicole Pond(University of Cambridge), Joy Shih(University of Cambridge), Rachel Sutcliffe(University of Cambridge), Tobias Tilly(University of Cambridge), Carmen Treacy(University of Cambridge), Zhen Tong(University of Cambridge), Jennifer Wood(University of Cambridge), Marta Wylot(University of Cambridge), Sample processing & data acquisition(University of Cambridge), Laura Bergamaschi(University of Cambridge), Ariana Betancourt(University of Cambridge), Georgie Bower(University of Cambridge), Chiara Cossetti(University of Cambridge), Aloka De(University of Cambridge), Madeline Epping(University of Cambridge), Stuart Fawke(University of Cambridge), Nick Gleadall(University of Cambridge), Richard Grenfell(University of Cambridge), Andrew Hinch(University of Cambridge), Oisín Huhn(University of Cambridge), Sarah Jackson(University of Cambridge), Isobel Jarvis(University of Cambridge), D. J. Lewis(University of Cambridge), Joe Marsden(University of Cambridge), Francesca Nice(University of Cambridge), Georgina Okecha(University of Cambridge), Ommar Omarjee(University of Cambridge), Marianne Perera(University of Cambridge), Nathan Richoz(University of Cambridge), Veronika Romashova(University of Cambridge), Natalia Savinykh Yarkoni(University of Cambridge), Rahul Sharma(University of Cambridge), Luca Stefanucci(University of Cambridge), Jonathan Stephens(University of Cambridge), Mateusz Strezlecki(University of Cambridge), Lori Turner(University of Cambridge), Eckart M. D. D. De Bie(University of Cambridge), Katherine Bunclark(University of Cambridge), Maša Josipović(University of Cambridge), Michael Mackay(University of Cambridge), Sabrina Rossi(Addenbrooke's Hospital), Mayurun Selvan(University of Cambridge), Sarah Spencer(Papworth Hospital NHS Foundation Trust), Cissy Yong(Papworth Hospital NHS Foundation Trust), Ali Ansaripour(Papworth Hospital NHS Foundation Trust), Alice Michael(Papworth Hospital NHS Foundation Trust), Lucy Mwaura(Cambridge University Hospitals NHS Foundation Trust), Caroline Patterson(Cambridge University Hospitals NHS Foundation Trust), Gary Polwarth(Fulbourn Hospital), Petra Polgarova(Fulbourn Hospital), Giovanni Di Stefano(Murdoch University), Codie Fahey(Murdoch University), Rachel Michel(Murdoch University), Sze-How Bong(Murdoch University), Jérôme D. Coudert(Murdoch University), Elaine Holmes(Murdoch University), NIHR BioResource(University of Cambridge), John Allison(University of Cambridge), Helen Butcher(University of Cambridge), Daniela Caputo(University of Cambridge), Debbie Clapham-Riley(University of Cambridge), Eleanor Dewhurst(University of Cambridge), Anita Furlong(University of Cambridge), Barbara Graves(University of Cambridge), Jennifer Gray(University of Cambridge), Tasmin Ivers(University of Cambridge), Mary Kasanicki(University of Cambridge), Emma Le Gresley(University of Cambridge), Rachel Linger(University of Cambridge), Sarah Meloy(University of Cambridge), Francesca Muldoon(University of Cambridge), Nigel Ovington(University of Cambridge), Sofia Papadia(University of Cambridge), Isabel Phelan(University of Cambridge), Hannah Stark(University of Cambridge), Kathleen Stirrups(University of Cambridge), Paul Townsend(University of Cambridge), Neil Walker(University of Cambridge), Jennifer Webster(University of Cambridge), Funding acquisition, leadership & supervision, metadata curation, project administration, samples & logistics, sequencing & analysis, software & analysis tools and visualization(King's College London), Samuel C. Robson(University of Cambridge), Funding acquisition, leadership & supervision, metadata curation, project administration, samples & logistics, sequencing & analysis and software & analysis tools(Public Health Wales), Nicholas J. Loman(Wellcome Sanger Institute), Thomas R. Connor(University of Oxford), Leadership & supervision, metadata curation, project administration, samples & logistics, sequencing & analysis, software & analysis tools and visualization(University of Brighton), Tanya Golubchik(Guy's and St Thomas' NHS Foundation Trust), Funding acquisition, metadata curation, samples & logistics, sequencing & analysis, software & analysis tools and visualization(University of Brighton), Rocio T. Martinez Nunez(University of Cambridge), Funding acquisition, leadership & supervision, metadata curation, project administration and samples & logistics(University Hospital Southampton NHS Foundation Trust), Catherine Ludden(University Hospital Southampton NHS Foundation Trust), Funding acquisition, leadership & supervision, metadata curation, samples & logistics and sequencing & analysis(Wellcome Sanger Institute), Sally Corden(Cambridge University Hospitals NHS Foundation Trust), Funding acquisition, leadership & supervision, project administration, samples & logistics and sequencing & analysis(St Thomas' Hospital), Ian Johnston(Public Health Wales), David Bonsall(University of Cambridge), Funding acquisition, leadership & supervision, sequencing & analysis, software & analysis tools and visualization(Wellcome Sanger Institute), Colin P. Smith(Belfast Health and Social Care Trust), Ali Raza Awan(University of Nottingham), Funding acquisition, samples & logistics, sequencing & analysis, software & analysis tools and visualization(Public Health Wales), Giselda Bucca(Wellcome Sanger Institute), Leadership & supervision, metadata curation, project administration, samples & logistics and sequencing & analysis(East Kent Hospitals University NHS Foundation Trust), M. Estée Török(Wellcome Sanger Institute), Leadership & supervision, metadata curation, project administration, samples & logistics and visualization(University of Birmingham), Kordo Saeed(Public Health Wales), Jacqui Prieto(Northumbria University), Leadership & supervision, metadata curation, project administration, sequencing & analysis and software & analysis tools(Wellcome Sanger Institute), David K. Jackson(University of Oxford), Metadata curation, project administration, samples & logistics, sequencing & analysis and software & analysis tools(Public Health England), William L. Hamilton(Public Health England), Metadata curation, project administration, samples & logistics, sequencing & analysis and visualization(University of Cambridge), Luke B. Snell(MRC University of Glasgow Centre for Virus Research), Funding acquisition, leadership & supervision, metadata curation and samples & logistics(University of Sheffield), Catherine Moore(Portsmouth Hospitals NHS Trust), Funding acquisition, leadership & supervision, project administration and samples & logistics(Northumbria University), Ewan M. Harrison(University of Oxford), Leadership & supervision, metadata curation, project administration and samples & logistics(Public Health Wales), Sónia Gonçalves(University of Portsmouth), Leadership & supervision, metadata curation, samples & logistics and sequencing & analysis(University of Cambridge), Derek Fairley(NHS Lothian), Matthew Loose(Wellcome Sanger Institute), Joanne Watkins(Wellcome Sanger Institute), Leadership & supervision, metadata curation, samples & logistics and software & analysis tools(University of Sheffield), Rich Livett(University of Sheffield), Leadership & supervision, metadata curation, samples & logistics and visualization(Wellcome Sanger Institute), Samuel Moses(University of Edinburgh), Leadership & supervision, metadata curation, sequencing & analysis and software & analysis tools(Quadram Institute), Roberto Amato(Public Health Wales), Sam Nicholls(Public Health Scotland), Matthew Bull(MRC University of Glasgow Centre for Virus Research), Leadership & supervision, project administration, samples & logistics and sequencing & analysis(Public Health England), Darren Smith(Oxford University Hospitals NHS Trust), Leadership & supervision, sequencing & analysis, software & analysis tools and visualization(Portsmouth Hospitals NHS Trust), Jeff Barrett(University Hospitals Sussex NHS Foundation Trust), David M. Aanensen(Wellcome Sanger Institute), Metadata curation, project administration, samples & logistics and sequencing & analysis(Wellcome Sanger Institute), Martin D. Curran(Public Health England), Surendra Parmar(University of Warwick), Dinesh Aggarwal(University of Warwick), James G. Shepherd(University of Liverpool), Metadata curation, project administration, sequencing & analysis and software & analysis tools(University of Liverpool), Matthew D. Parker(University of Liverpool), Metadata curation, samples & logistics, sequencing & analysis and visualization(Wellcome Sanger Institute), Sharon Glaysher(MRC University of Glasgow Centre for Virus Research), Metadata curation, sequencing & analysis, software & analysis tools and visualization(Imperial College London), Matthew Bashton(Quadram Institute), Anthony P. Underwood(University of Oxford), Nicole Pacchiarini(Wellcome Sanger Institute), Katie F. Loveson(Wellcome Sanger Institute), Project administration, sequencing & analysis, software & analysis tools and visualization(University of Cambridge), Alessandro M. Carabelli(MRC University of Glasgow Centre for Virus Research), Funding acquisition, leadership & supervision and metadata curatio(MRC University of Glasgow Centre for Virus Research), Kate Templeton(MRC University of Glasgow Centre for Virus Research), Funding acquisition, leadership & supervision and project administration(Newcastle upon Tyne Hospitals NHS Foundation Trust), Cordelia F. Langford(NHS Lothian), John Sillitoe(NHS Lothian), Thushan I. de Silva(University of Cambridge), Dennis Wang(University of Birmingham), Funding acquisition, leadership & supervision and sequencing & analysis(University Hospitals Coventry and Warwickshire NHS Trust), Dominic Kwiatkowski(Belfast Health and Social Care Trust), Andrew Rambaut(Northumbria University), Justin O’Grady(Northumbria University), Simon Cottrell(Northumbria University), Leadership & supervision, metadata curation and sequencing & analysis(Portsmouth Hospitals NHS Trust), Matthew T. G. Holden(East Kent Hospitals University NHS Foundation Trust), Emma C. Thomson(University of Exeter), Leadership & supervision, project administration and samples & logistics(University College London), Husam Osman(Cardiff University), Monique Andersson(Public Health Wales), Anoop Chauhan(University of Sheffield), Mohammed O. Hassan-Ibrahim(University of Edinburgh), Leadership & supervision, project administration and sequencing & analysis(Public Health Scotland), Mara Lawniczak(Centre for Human Genetics), Leadership & supervision, samples & logistics and sequencing & analysis(Wellcome Sanger Institute), Alex Alderton(University Hospital Southampton NHS Foundation Trust), Meera Chand(University Hospital Southampton NHS Foundation Trust), Chrystala Constantinidou(University Hospital Southampton NHS Foundation Trust), Meera Unnikrishnan(University of Cambridge), Alistair C. Darby(University of Edinburgh), Julian A. Hiscox(University of Brighton), Steve Paterson(University of Warwick), Leadership & supervision, sequencing & analysis and software & analysis tools(University of Oxford), Inigo Martincorena(University of Cambridge), David L. Robertson(Betsi Cadwaladr University Health Board), Erik Volz(University of Portsmouth), Andrew J. Page(University of Exeter), Oliver G. Pybus(University Hospitals Coventry and Warwickshire NHS Trust), Leadership & supervision, sequencing & analysis and visualization(Guy's and St Thomas' NHS Foundation Trust), Andrew R. Bassett(University College London), Metadata curation, project administration and samples & logistics(Centre for Human Genetics), Cristina V. Ariani(University of Oxford), Michael H. Spencer Chapman(Centre for Human Genetics), Kathy Li(Cardiff and Vale University Health Board), Rajiv Shah(Quadram Institute), Natasha Jesudason(Wellcome Sanger Institute), Yusri Taha(University of Cambridge), Metadata curation, project administration and sequencing & analysis(Public Health Wales), M. McHugh(Wellcome Sanger Institute), Rebecca Dewar(Public Health England), Metadata curation, samples & logistics and sequencing & analysis(University of Birmingham), Aminu S. Jahun(University of Cambridge), Claire McMurray(Public Health England), Sarojini Pandey(Gloucestershire Hospitals NHS Foundation Trust), James McKenna(Wye Valley NHS Trust), Andrew Nelson(Sandwell & West Birmingham Hospitals NHS Trust), Gregory R. Young(Norfolk and Norwich University Hospital), Clare M. McCann(Norfolk and Norwich University Hospital), Scott Elliott(Wellcome Sanger Institute), Metadata curation, samples & logistics and visualization(Wellcome Sanger Institute), Hannah Lowe(University of Exeter), Metadata curation, sequencing & analysis and software & analysis tools(University of Warwick), Ben Temperton(MRC University of Glasgow Centre for Virus Research), Sunando Roy(Queen's University Belfast), Anna Price(Public Health Wales), Sara Rey(University of Exeter), Matthew Wyles(University of Exeter), Metadata curation, sequencing & analysis and visualization(University of Exeter), Stefan Rooke(Barking, Havering And Redbridge University Hospitals NHS Trust), Sharif Shaaban(Barking, Havering And Redbridge University Hospitals NHS Trust), Project administration, samples & logistics and sequencing & analysis(Queen Elizabeth Hospital Birmingham), Mariateresa de Cesare(Public Health England), Project administration, samples & logistics and software & analysis tools(Queen Elizabeth Hospital Birmingham), Laura Letchford(Heartlands Hospital), Project administration, samples & logistics and visualization(Public Health England), Siona Silveira(Public Health England), Emanuela Pelosi(University Hospitals Coventry and Warwickshire NHS Trust), Eleri Wilson-Davies(University Hospitals Coventry and Warwickshire NHS Trust), Samples & logistics, sequencing & analysis and software & analysis tools(Wye Valley NHS Trust), Myra Hosmillo(University of Cambridge), Sequencing & analysis, software & analysis tools and visualization(University Hospitals of Leicester NHS Trust), Áine O’Toole(University of Liverpool), Andrew R. Hesketh(University of Liverpool), Richard Stark, Louis du Plessis, Chris Ruis, Helen Adams(Great Ormond Street Hospital for Children NHS Foundation Trust), Yann Bourgeois(Great Ormond Street Hospital for Children NHS Foundation Trust), Funding acquisition and leadership & supervision(Royal Free London NHS Foundation Trust), Stephen L. Michell(Royal Free London NHS Foundation Trust), Dimitris Grammatopoulos(Royal Free London NHS Foundation Trust), Jonathan D. Edgeworth(Royal Free London NHS Foundation Trust), Judith Breuer(Royal Free London NHS Foundation Trust), John A. Todd(Sandwell & West Birmingham Hospitals NHS Trust), Christophe Fraser(South Tees Hospitals NHS Foundation Trust), Funding acquisition and project administration(North Cumbria Integrated Care NHS Foundation Trust), David Buck(North Tees and Hartlepool NHS Foundation Trust), John P.T. Mo(Newcastle upon Tyne Hospitals NHS Foundation Trust), Leadership & supervision and metadata curation(Newcastle upon Tyne Hospitals NHS Foundation Trust), Gemma L. Kay(County Durham and Darlington NHS Foundation Trust), Leadership & supervision and project administration(University of Nottingham), Steve Palmer(Queen's Medical Centre), Sharon J. Peacock(Northern Lincolnshire and Goole Hospitals NHS Foundation Trust), David Heyburn(Queen's Medical Centre), Leadership & supervision and samples & logistics(Basingstoke and North Hampshire Hospital), Danni Weldon(Cambridge University Hospitals NHS Foundation Trust), Esther Robinson(Wellcome Sanger Institute), Alan McNally(Wellcome Sanger Institute), Peter Muir(University of Edinburgh), Ian B. Vipond(University of Liverpool), John Boyes(Great Ormond Street Hospital for Children NHS Foundation Trust), Venkat Sivaprakasam(Quadram Institute), Tranprit Salluja(University of Nottingham), Samir Dervisevic(University of Nottingham), Emma Meader(University of Nottingham), Leadership & supervision and sequencing & analysis(Public Health Wales), Naomi R. Park(Public Health Wales), Karen Oliver(Swansea University), Aaron R. Jeffries(University of Portsmouth), Sascha Ott(University of Portsmouth), Ana da Silva Filipe(University of Portsmouth), David Simpson(University of Portsmouth), Chris Williams(University of Portsmouth), Leadership & supervision and visualization(University of Portsmouth), Jane Masoli(Wellcome Sanger Institute), Metadata curation and samples & logistics(University of Cambridge), Bridget Knight(University of Cambridge), Christopher R. Jones(Wellcome Sanger Institute), Cherian Koshy(Wellcome Sanger Institute), Amy Ash(Wellcome Sanger Institute), Anna Casey(Wellcome Sanger Institute), Andrew Bosworth(Wellcome Sanger Institute), Liz Ratcliffe(Wellcome Sanger Institute), Li Xu-McCrae(Wellcome Sanger Institute), Hannah M. Pymont(Wellcome Sanger Institute), Stephanie Hutchings(Wellcome Sanger Institute), Lisa Berry(Wellcome Sanger Institute), Katie Jones(Guy's and St Thomas' NHS Foundation Trust), Fenella Halstead(University College London), Thomas Davis(University College London), Christopher W. Holmes(Centre for Human Genetics), Miren Iturriza‐Gómara(Oxford University Hospitals NHS Trust), Anita O. Lucaci(University Hospital Southampton NHS Foundation Trust), Paul Randell(University Hospital Southampton NHS Foundation Trust), Alison D. Cox(University of Cambridge), Pinglawathee Madona(University of Birmingham), Kathryn Harris(University of Birmingham), Julianne R. Brown(University of Cambridge), Tabitha Mahungu(Wellcome/MRC Cambridge Stem Cell Institute), Dianne Irish-Tavares(University of Cambridge), Tanzina Haque(University of Cambridge), Jennifer Hart(University of Cambridge), Eric Witele(University of Cambridge), Melisa Fenton(Wellcome Sanger Institute), Steven Liggett(Public Health England), Clive Graham(Public Health England), Emma Swindells(University of Birmingham), Jennifer Collins(University College London), Gary Eltringham(Northumbria University), Sharon Campbell(Quadram Institute), C. Patrick McClure(Centre for Human Genetics), Gemma Clark(Centre for Human Genetics), Tim J. Sloan(Public Health Wales), Carl Jones(Public Health Wales), Jessica Lynch(Public Health Wales), Metadata curation and sequencing & analysis(Public Health Wales), Ben Warne(Public Health Wales), Steven Leonard(Public Health Wales), Jillian Durham(Public Health Wales), Thomas Williams(Public Health Wales), Sam Haldenby(Public Health Wales), Nathaniel Storey(Public Health Wales), Nabil-Fareed Alikhan(Public Health Wales), Nadine Holmes(Public Health Wales), Christopher Moore(Public Health Wales), Matthew Carlile(Public Health Wales), Malorie Perry(Public Health Wales), Noel Craine(Public Health Wales), Ronan A Lyons(Public Health Wales), Angela H. Beckett(University of Sheffield), Salman Goudarzi(University of Sheffield), Christopher Fearn(University of Sheffield), Kate F. Cook(University of Sheffield), Hannah Dent(MRC University of Glasgow Centre for Virus Research), Hannah Paul(University of Cambridge), Metadata curation and software & analysis tools(Wellcome Sanger Institute), R. W. Davies(Wellcome Sanger Institute), Project administration and samples & logistics(Wellcome Sanger Institute), Beth Blane(Wellcome Sanger Institute), Sophia T. Girgis(Wellcome Sanger Institute), Mathew A. Beale(University of Warwick), Katherine L. Bellis(University of Warwick), Matthew J. Dorman(MRC University of Glasgow Centre for Virus Research), Eleanor Drury(MRC University of Glasgow Centre for Virus Research), Leanne Kane(MRC University of Glasgow Centre for Virus Research), Sally Kay(Imperial College London), Samantha McGuigan(Imperial College London), Rachel Nelson(Imperial College London), Liam Prestwood(Imperial College London), Shavanthi Rajatileka(Imperial College London), Rahul Batra(University of Oxford), Rachel Williams(University of Oxford), Mark Kristiansen(University of Oxford), Angie Green(Public Health Wales), Anita Justice(University of Sheffield), Adhyana I. K. Mahanama(University of Sheffield), Buddhini Samaraweera(Wellcome Sanger Institute), Project administration and sequencing & analysis(MRC University of Glasgow Centre for Virus Research), Nazreen F. Hadjirin(Quadram Institute), Joshua Quick(University of Oxford), Project administration and software & analysis tools(University of Oxford), Radoslaw Poplawski(University of Oxford), Samples & logistics and Sequencing & analysis(University of Oxford), Leanne M. Kermack(Wellcome Sanger Institute), Nicola Reynolds(Wye Valley NHS Trust), Grant Hall(Kettering General Hospital), Yasmin Chaudhry(Kettering General Hospital), Malte L. Pinckert, Iliana Georgana, Robin J. Moll, Alicia Thornton, Richard Myers(University College London), Joanne Stockton(Belfast Health and Social Care Trust), Charlotte A. Williams(Quadram Institute), Wen C. Yew(Public Health Wales), Alexander J. Trotter(Public Health Wales), Amy Trebes(Public Health Wales), George MacIntyre-Cockett(Cardiff and Vale University Health Board), Alec Birchley(NHS Lothian), Alexander Adams(Wellcome Sanger Institute), Amy Plimmer, Bree Gatica-Wilcox(Norfolk and Norwich University Hospital), Caoimhe McKerr(Queen's Medical Centre), Ember Hilvers(Oxford University Hospitals NHS Trust), Hannah Jones(Oxford University Hospitals NHS Trust), Hibo Asad(Oxford University Hospitals NHS Trust), Jason Coombes(Hampshire Hospitals NHS Foundation Trust), Johnathan M. Evans(Cardiff University), Laia Fina(Cardiff University), Lauren Gilbert(Cardiff University), Lee Graham(Cardiff University), Michelle Cronin(Cardiff University), Sara Kumziene-Summerhayes(Queen's University Belfast), Sarah Taylor(Public Health Agency), Sophie Jones(Wellcome Sanger Institute), Danielle C. Groves(Wellcome Sanger Institute), Peijun Zhang(University of Cambridge), Marta Gallis(University of Cambridge), Stavroula F. Louka(University of Cambridge), Samples & logistics and software & analysis tools(University of Cambridge), Igor Starinskij(University of Cambridge), Sequencing & analysis and software & analysis tools(University of Cambridge), Chris Jackson, Marina Gourtovaia(London School of Hygiene & Tropical Medicine), Gerry Tonkin‐Hill(Quadram Institute), Kevin Lewis(University of Oxford), Jaime M. Tovar-Corona(Public Health Wales), Keith James(Public Health Wales), Laura Baxter(Public Health Wales), Mohammad Tauqeer Alam(Public Health Wales), Richard Orton(University of Portsmouth), Joseph Hughes(University Hospital Southampton NHS Foundation Trust), Vattipally B. Sreenu(University of Sheffield), Manon Ragonnet‐Cronin(University of Cambridge), Fabrícia F. Nascimento(Wellcome Sanger Institute), David Jorgensen(University of Cambridge), Olivia Boyd(University of Cambridge), Lily Geidelberg(University of Cambridge), Alex E. Zarebski(University of Cambridge), Jayna Raghwani(University of Cambridge), Moritz U. G. Kraemer(University of Cambridge), Joel Southgate(University of Cambridge), Benjamin B. Lindsey(Wellcome/MRC Cambridge Stem Cell Institute), Timothy M. Freeman(Wellcome Sanger Institute), Software & analysis tools and visualization(Wellcome Sanger Institute), Jon-Paul Keatley(Wellcome Sanger Institute), Joshua B. Singer(University of Edinburgh), Leonardo de Oliveira Martins(University of Exeter), Corin Yeats(University of Exeter), Khalil Abudahab(Royal Devon & Exeter NHS Foundation Trust), Ben Taylor(Public Health England), Mirko Menegazzo(Public Health England), Leadership & supervision(Public Health England), John Danesh(University of Birmingham), Wendy Hogsden(University of Birmingham), Sahar Eldirdiri(University of Birmingham), Anita Kenyon(University of Birmingham), Jenifer Mason(University of Birmingham), Trevor I. Robinson(University of Birmingham), Alison Holmes(University of Birmingham), James Price(Cambridge University Hospitals NHS Foundation Trust), John A. Hartley(University of Birmingham), Tanya Curran(University of Birmingham), Alison E. Mather(University of Birmingham), Giri Shankar(Public Health England), Rachel Jones(MRC University of Glasgow Centre for Virus Research), Robin Howe(MRC University of Glasgow Centre for Virus Research), Sian Morgan(NHS Greater Glasgow and Clyde), Metadata curation(NHS Greater Glasgow and Clyde), Elizabeth Wastenge(NHS Greater Glasgow and Clyde), Michael Chapman(NHS Greater Glasgow and Clyde), Siddharth Mookerjee(NHS Greater Glasgow and Clyde), Rachael Stanley(University Hospitals of Leicester NHS Trust), Wendy Smith(University Hospitals of Leicester NHS Trust), Tim Peto(University Hospitals of Leicester NHS Trust), David W. Eyre(University Hospitals of Leicester NHS Trust), Derrick W. Crook(Leeds Teaching Hospitals NHS Trust), Gabrielle Vernet(Leeds Teaching Hospitals NHS Trust), Christine Kitchen(Leeds Teaching Hospitals NHS Trust), Huw Gulliver(Leeds Teaching Hospitals NHS Trust), Ian Merrick(Public Health England), Martyn F. Guest(University of Liverpool), Robert J. Munn(Public Health England), Declan Bradley(Manchester University NHS Foundation Trust), Tim Wyatt(University of Liverpool), Project administration, Charlotte Beaver, Luke Foulser, Sophie Palmer, Carol Churcher(St Thomas' Hospital), Ellena Brooks(Guy's and St Thomas' NHS Foundation Trust), Kim S. Smith(St Thomas' Hospital), Katerina Galai, Georgina M. McManus, Frances Bolt(Imperial College London), Francesc Coll(Imperial College London), Lizzie Meadows(Great Ormond Street Hospital for Children NHS Foundation Trust), Stephen W. Attwood(Great Ormond Street Hospital for Children NHS Foundation Trust), Alisha Davies(Great Ormond Street Hospital for Children NHS Foundation Trust), Elen De Lacy(University College London), Fatima Downing(University College London), Sue Edwards(University College London), Garry P. Scarlett(University College London), Sarah Jeremiah(University College London), Darren Smith, Samples & logistics, Danielle Leek(Sandwell & West Birmingham Hospitals NHS Trust), Sushmita Sridhar(Sandwell & West Birmingham Hospitals NHS Trust), Sally Forrest(Maidstone and Tunbridge Wells NHS Trust), Claire Cormie(Queen's University Belfast), Harmeet K. Gill(South Tees Hospitals NHS Foundation Trust), Joana Dias(South Tees Hospitals NHS Foundation Trust), Ellen E. Higginson(South Tees Hospitals NHS Foundation Trust), Mailis Maes(North Cumbria Integrated Care NHS Foundation Trust), Jamie Young(North Cumbria Integrated Care NHS Foundation Trust), Michelle Wantoch(North Cumbria Integrated Care NHS Foundation Trust), Dorota Jamrozy(North Tees and Hartlepool NHS Foundation Trust), Stephanie W. Lo(Newcastle upon Tyne Hospitals NHS Foundation Trust), Minal Patel(Newcastle upon Tyne Hospitals NHS Foundation Trust), Verity Hill(Newcastle upon Tyne Hospitals NHS Foundation Trust), Claire Bewshea(County Durham and Darlington NHS Foundation Trust), Sian Ellard(County Durham and Darlington NHS Foundation Trust), Cressida Auckland(County Durham and Darlington NHS Foundation Trust), Ian Harrison(County Durham and Darlington NHS Foundation Trust), Chloe Bishop(Gateshead Health NHS Foundation Trust), Vicki Chalker(Gateshead Health NHS Foundation Trust), Alex Richter(Norfolk County Council), Andrew D. Beggs(University of East Anglia), Angus Best(East Suffolk and North Essex NHS Foundation Trust), Benita Percival(Norfolk and Norwich University Hospital), Jeremy Mirza(University of Nottingham), Oliver Megram(University of Nottingham), Megan Mayhew(University of Nottingham), Liam Crawford(University of Nottingham), Fiona Ashcroft(Queen's Medical Centre), Emma Moles-Garcia(Queen's Medical Centre), Nicola Cumley(Queen's Medical Centre), Richard Hopes(Queen's Medical Centre), Patawee Asamaphan(Queen's Medical Centre), Marc Niebel(Queen's Medical Centre), Rory Gunson(Queen's Medical Centre), Amanda J. Bradley(Queen's Medical Centre), Alasdair Maclean(Northern Lincolnshire and Goole Hospitals NHS Foundation Trust), Guy Mollett(Northern Lincolnshire and Goole Hospitals NHS Foundation Trust), Rachel Blacow(Basingstoke and North Hampshire Hospital), Paul Bird(Basingstoke and North Hampshire Hospital), Thomas Helmer(Basingstoke and North Hampshire Hospital), Karlie Fallon(Basingstoke and North Hampshire Hospital), Julian W. Tang(Basingstoke and North Hampshire Hospital), Antony Hale(Hampshire Hospitals NHS Foundation Trust), Louissa Macfarlane-Smith(Public Health Wales), Katherine L. Harper(Portsmouth Hospitals NHS Trust), Holli Carden(Portsmouth Hospitals NHS Trust), Nicholas W. Machin(Portsmouth Hospitals NHS Trust), Kathryn Jackson(Portsmouth Hospitals NHS Trust), Shazaad Ahmad(University Hospitals Sussex NHS Foundation Trust), Ryan P. George(University Hospitals Sussex NHS Foundation Trust), Lance Turtle(Princess Alexandra Hospital NHS Trust), Elaine O’Toole(Princess Alexandra Hospital NHS Trust), Joanne Watts(University of Sheffield), Cassie Breen(University of Sheffield), Angela Cowell(University of Sheffield), Adela Alcolea-Medina(University of Sheffield), Themoula Charalampous(University of Sheffield), Amita Patel(Wellcome Sanger Institute), Lisa J. Levett(Wellcome Sanger Institute), Judith Heaney(Wellcome Sanger Institute), Aileen Rowan(Wellcome Sanger Institute), Graham P. Taylor(Wellcome Sanger Institute), Divya Shah(Wellcome Sanger Institute), Laura Atkinson(Wellcome Sanger Institute), Jack C. D. Lee(Wellcome Sanger Institute), Adam Westhorpe(Wellcome Sanger Institute), Riaz Jannoo(Wellcome Sanger Institute), Helen L. Lowe(Wellcome Sanger Institute), Angeliki Karamani(Wellcome Sanger Institute), Leah Ensell(Wellcome Sanger Institute), Wendy Chatterton(Wellcome Sanger Institute), Monika Pusok(Wellcome Sanger Institute), Ashok Dadrah(Wellcome Sanger Institute), Amanda Symmonds(Wellcome Sanger Institute), Graciela Sluga(Wellcome Sanger Institute), Zoltán Molnár(Wellcome Sanger Institute), Paul Baker(Wellcome Sanger Institute), Stephen Bonner(Wellcome Sanger Institute), Sarah Essex(Wellcome Sanger Institute), Edward Barton(Wellcome Sanger Institute), Debra Padgett(Wellcome Sanger Institute), Garren Scott(Wellcome Sanger Institute), Jane Greenaway(Wellcome Sanger Institute), Brendan Payne(Wellcome Sanger Institute), Shirelle Burton-Fanning(Wellcome Sanger Institute), Sheila Waugh(Wellcome Sanger Institute), Veena Raviprakash(Wellcome Sanger Institute), Nicola Sheriff(Wellcome Sanger Institute), Victoria Blakey(Wellcome Sanger Institute), Lesley-Anne Williams(Wellcome Sanger Institute), Jonathan P. Moore(Wellcome Sanger Institute), Susanne Stonehouse(Wellcome Sanger Institute), Louise Smith(Wellcome Sanger Institute), Rose K. Davidson(Wellcome Sanger Institute), Luke Bedford(Wellcome Sanger Institute), Lindsay Coupland(Wellcome Sanger Institute), Victoria Wright(Wellcome Sanger Institute), Joseph Chappell(Wellcome Sanger Institute), Theocharis Tsoleridis(Wellcome Sanger Institute), Jonathan K. Ball(Wellcome Sanger Institute), Manjinder Khakh(Wellcome Sanger Institute), Vicki M. Fleming(Wellcome Sanger Institute), Michelle M. Lister(Wellcome Sanger Institute), Hannah C. Howson‐Wells(Wellcome Sanger Institute), Louise Berry(Wellcome Sanger Institute), Tim Boswell(Wellcome Sanger Institute), Amelia Joseph(Wellcome Sanger Institute), Iona Willingham(Wellcome Sanger Institute), Nichola Duckworth(Wellcome Sanger Institute), Sarah Walsh(Wellcome Sanger Institute), Emma L. Wise(Wellcome Sanger Institute), Nathan Moore(Wellcome Sanger Institute), Matilde Mori(Wellcome Sanger Institute), Nick Cortes(Wellcome Sanger Institute), Stephen P. Kidd(Wellcome Sanger Institute), Rebecca Williams(Wellcome Sanger Institute), Laura Gifford(Wellcome Sanger Institute), Kelly Bicknell(Wellcome Sanger Institute), Sarah Wyllie(Wellcome Sanger Institute), Allyson Lloyd(Wellcome Sanger Institute), Robert Impey(Wellcome Sanger Institute), Cassandra S. Malone(Wellcome Sanger Institute), Benjamin J. Cogger(Wellcome Sanger Institute), Nick Levene(Wellcome Sanger Institute), Lynn Monaghan(Wellcome Sanger Institute), Alexander J. Keeley(Wellcome Sanger Institute), David G. Partridge(Wellcome Sanger Institute), Mohammad Raza(Wellcome Sanger Institute), Cariad Evans(Wellcome Sanger Institute), KATE JOHNSON(Wellcome Sanger Institute), Irina Abnizova(Wellcome Sanger Institute), Louise Aigrain(Wellcome Sanger Institute), Alex Alderton(Wellcome Sanger Institute), Mozam Ali(Wellcome Sanger Institute), Laura Allen(Wellcome Sanger Institute), Roberto Amato(Wellcome Sanger Institute), Ralph Anderson(Wellcome Sanger Institute), Cristina V. Ariani(Wellcome Sanger Institute), Siobhan Austin-Guest(Wellcome Sanger Institute), Sendu Bala(Wellcome Sanger Institute), Jeffrey C. Barrett(Wellcome Sanger Institute), Andrew R. Bassett(Wellcome Sanger Institute), Kristina Battleday(Wellcome Sanger Institute), James R. Beal(Wellcome Sanger Institute), Mathew A. Beale(Wellcome Sanger Institute), Charlotte Beaver(Wellcome Sanger Institute), Sam Bellany(Wellcome Sanger Institute), Tristram Bellerby(Wellcome Sanger Institute), Katie Bellis(University of Cambridge), Duncan Berger(Wellcome Sanger Institute), Matthew Berriman(Wellcome Sanger Institute), Emma Betteridge(Wellcome Sanger Institute), Paul Bevan(Wellcome Sanger Institute), Simon Binley(Wellcome Sanger Institute), Jason Bishop(Wellcome Sanger Institute), Kirsty Blackburn(Wellcome Sanger Institute), James Bonfield(Wellcome Sanger Institute), Nick Boughton(Wellcome Sanger Institute), Sam Bowker(Wellcome Sanger Institute), Timothy Brendler-Spaeth(Cambridge University Hospitals NHS Foundation Trust), Iraad F. Bronner(Wellcome Sanger Institute), Tanya Brooklyn(Wellcome Sanger Institute), Sarah K. Buddenborg(Wellcome Sanger Institute), R.L. Bush(Wellcome Sanger Institute), Catarina Caetano(Wellcome Sanger Institute), Alex Cagan(Wellcome Sanger Institute), Nicola Carter(Wellcome Sanger Institute), Joanna Cartwright(Wellcome Sanger Institute), Tiago Monteiro(Wellcome Sanger Institute), Liz Chapman(Wellcome Sanger Institute), Tracey-Jane Chillingworth(Wellcome Sanger Institute), Peter Clapham(Wellcome Sanger Institute), Richard Clark(Wellcome Sanger Institute), Adrian Clarke(Wellcome Sanger Institute), Catriona Clarke(Wellcome Sanger Institute), Daryl Cole(Wellcome Sanger Institute), Elizabeth Cook(Wellcome Sanger Institute), Maria Coppola(Wellcome Sanger Institute), Linda Cornell(Wellcome Sanger Institute), Clare Cornwell(Wellcome Sanger Institute), Craig Corton(Wellcome Sanger Institute), Abby Crackett(Wellcome Sanger Institute), Alison Cranage(Wellcome Sanger Institute), Harriet Craven(Wellcome Sanger Institute), Sarah Craw(Wellcome Sanger Institute), Mark Crawford(Wellcome Sanger Institute), Tim Cutts(Wellcome Sanger Institute), Monika Dąbrowska(Wellcome Sanger Institute), Matt Davies(Wellcome Sanger Institute), R. W. Davies(Wellcome Sanger Institute), Joseph Dawson(Wellcome Sanger Institute), Callum Day(Wellcome Sanger Institute), Aiden Densem(Wellcome Sanger Institute), Thomas Dibling(Wellcome Sanger Institute), Cat Dockree(Wellcome Sanger Institute), D. C. Dodd(Wellcome Sanger Institute), Sunil Kumar Dogga(University of Oxford), Matthew J. Dorman(Wellcome Sanger Institute), Gordon Dougan(University of Cambridge), Martin Dougherty(Wellcome Sanger Institute), Alexander Dove(Wellcome Sanger Institute), Lucy Drummond(Wellcome Sanger Institute), Eleanor Drury(Wellcome Sanger Institute), Monika Dudek(Wellcome Sanger Institute), Jillian Durham(Wellcome Sanger Institute), Laura Durrant(Wellcome Sanger Institute), Elizabeth Easthope(Wellcome Sanger Institute), Sabine Eckert(Wellcome Sanger Institute), Peter Ellis(Wellcome Sanger Institute), Ben W. Farr(Wellcome Sanger Institute), Michael Fenton(Wellcome Sanger Institute), Marcella Ferrero(Wellcome Sanger Institute), Neil Flack(Wellcome Sanger Institute), Howerd Fordham(Wellcome Sanger Institute), Grace Forsythe(Wellcome Sanger Institute), Luke Foulser(Wellcome Sanger Institute), Matt Francis(Wellcome Sanger Institute), Audrey Fraser(Wellcome Sanger Institute), Adam Freeman(Wellcome Sanger Institute), Anastasia Galvin(Wellcome Sanger Institute), Maria Garcia-Casado(Wellcome Sanger Institute), Alex Gedny(Wellcome Sanger Institute), Sophia T. Girgis(Wellcome Sanger Institute), James Glover(Wellcome Sanger Institute), Sónia Gonçalves(Wellcome Sanger Institute), Scott Goodwin(Wellcome Sanger Institute), Oliver Gould(Wellcome Sanger Institute), Marina Gourtovaia(Wellcome Sanger Institute), Andy Gray(Wellcome Sanger Institute), Emma Gray(Wellcome Sanger Institute), Chris Griffiths(Wellcome Sanger Institute), Yong Gu(Wellcome Sanger Institute), Florence Guerin(Wellcome Sanger Institute), Will Hamilton(Wellcome Sanger Institute), Hannah Hanks(Wellcome Sanger Institute), Ewan M. Harrison(Wellcome Sanger Institute), Alexandria Harrott(Wellcome Sanger Institute), Edward Harry(Wellcome Sanger Institute), Julia Harvison(Wellcome Sanger Institute), Paul T. Heath(Wellcome Sanger Institute), Anastasia Hernández-Koutoucheva(Wellcome Sanger Institute), Rhiannon Hobbs(Wellcome Sanger Institute), Dave Holland(Wellcome Sanger Institute), Sarah Holmes(Wellcome Sanger Institute), Gary Hornett(Wellcome Sanger Institute), Nicholas Hough(Wellcome Sanger Institute), Liz Huckle(Wellcome Sanger Institute), Lena Hughes-Hallet(Wellcome Sanger Institute), Adam Hunter(Wellcome Sanger Institute), Stephen Inglis(Wellcome Sanger Institute), Sameena Iqbal(Wellcome Sanger Institute), Adam Jackson(Wellcome Sanger Institute), David K. Jackson(Wellcome Sanger Institute), Keith James(Wellcome Sanger Institute), Dorota Jamrozy(Wellcome Sanger Institute), Carlos Jimenez Verdejo(Wellcome Sanger Institute), Ian Johnston(Wellcome Sanger Institute), Matthew Jones(Wellcome Sanger Institute), Kalyan Kallepally(Wellcome Sanger Institute), Leanne Kane(Wellcome Sanger Institute), Keely Kay(Wellcome Sanger Institute), Sally Kay(Wellcome Sanger Institute), Jon Keatley(Wellcome Sanger Institute), Alan Keith(Wellcome Sanger Institute), Alison King(Wellcome Sanger Institute), Lucy Kitchin(Wellcome Sanger Institute), Matt Kleanthous(Wellcome Sanger Institute), Martina Klimekova(Wellcome Sanger Institute), Petra Korlević(Wellcome Sanger Institute), Ksenia Krasheninnkova(Wellcome Sanger Institute), Dominic Kwiatkowski(Wellcome Sanger Institute), Greg Lane(Wellcome Sanger Institute), Cordelia Langford(Wellcome Sanger Institute), Adam Laverack(Wellcome Sanger Institute), Katharine Law(Wellcome Sanger Institute), Mara Lawniczak(Wellcome Sanger Institute), Stefanie V. Lensing(Wellcome Sanger Institute), Steven Leonard(Wellcome Sanger Institute), Laura Letchford(Wellcome Sanger Institute), Kevin Lewis(Wellcome Sanger Institute), Amanah Lewis-Wade(Wellcome Sanger Institute), Jennifer Liddle(Wellcome Sanger Institute), Quan Lin(Wellcome Sanger Institute), Sarah Lindsay(Wellcome Sanger Institute), Sally Linsdell(Wellcome Sanger Institute), Rich Livett(Wellcome Sanger Institute), Stephanie W. Lo(Wellcome Sanger Institute), Rhona Long(Wellcome Sanger Institute), Jamie Lovell(Wellcome Sanger Institute), Jon Lovell(Wellcome Sanger Institute), Catherine Ludden(Wellcome Sanger Institute), James Mack(Wellcome Sanger Institute), Mark Maddison(Wellcome Sanger Institute), Aleksei Makunin(Wellcome Sanger Institute), Irfan Mamun(Wellcome Sanger Institute), Jenny Mansfield(Wellcome Sanger Institute), Neil Marriott(Wellcome Sanger Institute), Matt Martin(Wellcome Sanger Institute), Inigo Martincorena(Wellcome Sanger Institute), Matthew Mayho(Wellcome Sanger Institute), Shane McCarthy(Wellcome Sanger Institute), Jo McClintock(Wellcome Sanger Institute), Samantha McGuigan(Wellcome Sanger Institute), Sandra McHugh(Wellcome Sanger Institute), Liz McMinn(Wellcome Sanger Institute), Carl Meadows(Wellcome Sanger Institute), Emily Mobley(Wellcome Sanger Institute), Robin J. Moll(Wellcome Sanger Institute), Maria Morra(Wellcome Sanger Institute), Leanne Morrow(Wellcome Sanger Institute), Kathryn Murie(Wellcome Sanger Institute), Sian Nash(Wellcome Sanger Institute), Claire Nathwani(Wellcome Sanger Institute), Plamena Naydenova(Wellcome Sanger Institute), Alexandra Neaverson(Wellcome Sanger Institute), Rachel Nelson(Wellcome Sanger Institute), Ed Nerou(Wellcome Sanger Institute), Jon Nicholson(Wellcome Sanger Institute), Tabea Nimz(Wellcome Sanger Institute), Guillaume Noell(Wellcome Sanger Institute), Sarah O’Meara(Wellcome Sanger Institute), Valeriu Ohan(Wellcome Sanger Institute), Karen Oliver(Wellcome Sanger Institute), Charles Olney(Wellcome Sanger Institute), Doug Ormond(Wellcome Sanger Institute), Ágnes Oszlánczi(Wellcome Sanger Institute), Steve Palmer(Wellcome Sanger Institute), Yoke Fei Pang(Wellcome Sanger Institute), Barbora Pardubska(Wellcome Sanger Institute), Naomi Park(Wellcome Sanger Institute), Aaron Parmar(Wellcome Sanger Institute), Gaurang Patel(Wellcome Sanger Institute), Minal Patel(Wellcome Sanger Institute), Maggie Payne(Wellcome Sanger Institute), Sharon J. Peacock(Wellcome Sanger Institute), Arabella Petersen(Wellcome Sanger Institute), Deborah Plowman(Wellcome Sanger Institute), Tom Preston(Wellcome Sanger Institute), Liam Prestwood(Wellcome Sanger Institute), Christoph Puethe(Wellcome Sanger Institute), Michael A. Quail(Wellcome Sanger Institute), Diana Rajan(Wellcome Sanger Institute), Shavanthi Rajatileka(Wellcome Sanger Institute), Richard Rance(Wellcome Sanger Institute), Suzannah Rawlings(Wellcome Sanger Institute), Nicholas Redshaw(Wellcome Sanger Institute), Joe Reynolds(Wellcome Sanger Institute), Mark Reynolds(Wellcome Sanger Institute), Simon Rice(Wellcome Sanger Institute), Matt Richardson(Wellcome Sanger Institute), Connor Roberts(Wellcome Sanger Institute), Katrina Robinson(Wellcome Sanger Institute), Melanie Robinson(Wellcome Sanger Institute), David M. Robinson(Wellcome Sanger Institute), Hazel Rogers(Wellcome Sanger Institute), Eduardo Martin Rojo(Wellcome Sanger Institute), Daljit Roopra(Wellcome Sanger Institute), Mark E. Rose(Wellcome Sanger Institute), Luke Rudd(Wellcome Sanger Institute), Ramin Sadri(Wellcome Sanger Institute), Nicholas Salmon(Wellcome Sanger Institute), David Saul(Wellcome Sanger Institute), Frank Schwach(Wellcome Sanger Institute), Carol Scott(Wellcome Sanger Institute), Phil Seekings(Wellcome Sanger Institute), Lesley Shirley(Wellcome Sanger Institute), John Sillitoe(Wellcome Sanger Institute), Alison Simms(Wellcome Sanger Institute), Matt Sinnott(Wellcome Sanger Institute), Shanthi Sivadasan(Wellcome Sanger Institute), Bart Siwek(Wellcome Sanger Institute), Dale Sizer(Wellcome Sanger Institute), Kenneth Skeldon(Wellcome Sanger Institute), Jason Skelton(Wellcome Sanger Institute), Joanna Slater-Tunstill(Wellcome Sanger Institute), Lisa Sloper(Wellcome Sanger Institute), Nathalie Smerdon(Wellcome Sanger Institute), Chris Smith(Cambridge University Hospitals NHS Foundation Trust), Christen Smith(Cambridge University Hospitals NHS Foundation Trust), James Smith(Wellcome Sanger Institute), Katie Smith(University of Cambridge), Michelle Smith(University of Edinburgh), Sean B. Smith(University of Edinburgh), Tina Smith(University of Edinburgh), Leighton Sneade(University of Exeter), C. Soria(University of Exeter), Catarina Sousa(University of Exeter), Emily Souster(University of Exeter), Andrew Sparkes(University of Exeter), Michael Spencer-Chapman(University of Exeter), Janet Squares(University of Exeter), Robert Stanley(Public Health England), Claire Steed(Public Health England), Tim Stickland(Public Health England), Ian Still(Public Health England), Mike Stratton(Public Health England), Michelle Strickland(Public Health England), Allen Swann(Public Health England), Agnieszka Świątkowska(Public Health England), Neil Sycamore(Public Health England), Emma Swift(Public Health England), Edward Symons(Public Health England), Suzanne Szluha(Public Health England), Emma Taluy(Public Health England), Nunu Tao(Public Health England), Katy Taylor(Public Health England), Sam Taylor(Public Health England), Stacey Thompson(Public Health England), Mark A. Thompson(Public Health England), M. Thomson(Public Health England), Nicholas M. Thomson(Public Health England), Scott Thurston(Public Health England), Gerry Tonkin‐Hill(Public Health England), Dee Toombs(Public Health England), Benjamin Topping(University of Warwick), Jaime M. Tovar-Corona(University of Warwick), Daniel Ungureanu(University of Warwick), James Uphill(University of Warwick), Jana Urbanová(University of Warwick), Philip Jansen Van(MRC University of Glasgow Centre for Virus Research), Valerie E. Vancollie(MRC University of Glasgow Centre for Virus Research), Paul Voak(MRC University of Glasgow Centre for Virus Research), Danielle Walker(MRC University of Glasgow Centre for Virus Research), Matthew Walker(MRC University of Glasgow Centre for Virus Research), Matt Waller, Gary H. Ward(MRC University of Glasgow Centre for Virus Research), Charlie Weatherhogg(MRC University of Glasgow Centre for Virus Research), Niki Webb(MRC University of Glasgow Centre for Virus Research), Danni Weldon(Public Health Scotland), Alan Wells(University of Liverpool), Eloise Wells(University of Liverpool), Luke Westwood(University of Liverpool), Theo Whipp(University of Liverpool), Thomas Whiteley(University of Liverpool), Georgia Whitton(University of Liverpool), Andrew Whitwham(University of Liverpool), Sara Widaa(University of Liverpool), Mia Williams(University of Liverpool), Mark W. Wilson(University of Liverpool), Sean Wright(Guy's and St Thomas' NHS Foundation Trust), Sequencing & analysis(King's College London), Emma Betteridge(King's College London), Ben W. Farr(King's College London), Scott Goodwin(Guy's and St Thomas' NHS Foundation Trust), Michael A. Quail(Guy's and St Thomas' NHS Foundation Trust), Carol Scott(Guy's and St Thomas' NHS Foundation Trust), Lesley Shirley(Guy's and St Thomas' NHS Foundation Trust), Scott A. J. Thurston(Guy's and St Thomas' NHS Foundation Trust), Diana Rajan(University College London), Iraad F. Bronner(University College London), Louise Aigrain(Queen's University Belfast), Nicholas Redshaw(Queen's University Belfast), Stefanie V. Lensing(Newcastle University), Shane McCarthy(Newcastle University), Alex Makunin(Quadram Institute), Carlos E. Balcazar(Quadram Institute), Michael D. Gallagher(Quadram Institute), Kathleen A. Williamson(University of Nottingham), Thomas D. Stanton(University of Nottingham), Michelle L. Michelsen(University of Oxford), Joanna Warwick-Dugdale(University of Oxford), Robin Manley(University of Oxford), Audrey Farbos(University of Oxford), James W. Harrison(Cardiff University), Christine Sambles(Cardiff and Vale University Health Board), David J. Studholme(Cardiff and Vale University Health Board), Angie Lackenby(Cardiff and Vale University Health Board), Tamyo Mbisa(Public Health Wales), Steven G. Platt(Cardiff and Vale University Health Board), Shahjahan Miah(Cardiff and Vale University Health Board), David Bibby(Cardiff University), Carmen de Guerrero Manso(Cardiff University), Jonathan Hubb(Cardiff University), Gavin Dabrera(University of Sheffield), Mary Ramsay(University of Sheffield), Daniel Bradshaw(University of Sheffield), Ulf Schaefer(University of Sheffield), Natalie Groves(University of Sheffield), Eileen Gallagher(University of Sheffield), David Lee(Wellcome Sanger Institute), David A. Williams(Wellcome Sanger Institute), Nicholas Ellaby(Wellcome Sanger Institute), Hassan Hartman(Wellcome Sanger Institute), Nikos Manesis(University of Birmingham), Vineet Patel(Imperial College London), Juan Ledesma(Quadram Institute), Katherine A. Twohig(Public Health Wales), Elias Allara(Imperial College London), Clare Pearson(Cambridge University Hospitals NHS Foundation Trust), Jeffrey K. J. Cheng(University of Cambridge), Hannah E. Bridgewater(MRC Laboratory of Molecular Biology), Lucy R. Frost(MRC Laboratory of Molecular Biology), Grace Taylor-Joyce(MRC Laboratory of Molecular Biology), Paul E. Brown(Amsterdam UMC Location University of Amsterdam), L. Tong(University of Cambridge), Alice Broos, Daniel Mair(Wellcome Sanger Institute), Jenna Nichols(Addenbrooke's Hospital), Stephen Carmichael(Addenbrooke's Hospital), Katherine Smollett(Universidad de Cuautitlán Izcalli), Kyriaki Nomikou(University of Colorado Denver), Elihú Aranday-Cortés(University College London), Natasha Johnson(Cambridge University Hospitals NHS Foundation Trust), Seema Nickbakhsh(Addenbrooke's Hospital), Edith E. Vamos(Cambridge University Hospitals NHS Foundation Trust), Margaret Hughes(University of Cambridge), Lucille Rainbow(Cambridge University Hospitals NHS Foundation Trust), Richard Eccles(University of Cambridge), Charlotte Nelson(University College London), Mark Whitehead(Africa Health Research Institute), Richard D. Gregory, Matthew Gemmell, Claudia Wierzbicki, Hermione J. Webster, Chloe L. Fisher, Adrian W. Signell, Gilberto Betancor, Harry Wilson, Gaia Nebbia, Flavia Flaviani, Alberto C. Cerda, Tammy V. Merrill, Rebekah E. Wilson, Marius Cotic, Nadua Bayzid, Thomas Thompson, Erwan Acheson, Steven Rushton, S. O’Brien, David Baker, Steven Rudder, Alp Aydin, Fei Sang, Johnny Debebe, Sarah François, Tetyana I. Vasylyeva, Marina Escalera Zamudio, Bernardo Gutiérrez, Angela Marchbank, Joshua Maksimovic, Karla Spellman, Kathryn McCluggage, Mari Morgan, Robert Beer, Safiah Afifi, Trudy Workman, William Fuller, Catherine Bresner, Adrienn Angyal, Luke R. Green, Paul J. Parsons, Rachel Tucker, Rebecca Brown, Max Whiteley, Software & analysis tools, James Bonfield, Christoph Puethe, Andrew Whitwham, Jennifier Liddle, Will Rowe, Igor Siveroni, Thanh Le-Viet, Amy Gaskin, Visualization, Rob Johnson, Katherine Sharrocks(Cambridge University Hospitals NHS Foundation Trust), Elizabeth Blane(University of Cambridge), Yorgo Modis(MRC Laboratory of Molecular Biology), Kendra E. Leigh(MRC Laboratory of Molecular Biology), John A. G. Briggs(MRC Laboratory of Molecular Biology), Marit J. van Gils(Amsterdam UMC Location University of Amsterdam), Kenneth G. C. Smith(University of Cambridge), John R. Bradley(University of Cambridge), Chris Smith(Cambridge University Hospitals NHS Foundation Trust), Rainer Döffinger(Addenbrooke's Hospital), Lourdes Ceron‐Gutierrez(Addenbrooke's Hospital), Gabriela Barcenas‐Morales(Universidad de Cuautitlán Izcalli), David D. Pollock(University of Colorado Denver), Richard A. Goldstein(University College London), Anna Smielewska(University of Cambridge), Jordan P. Skittrall(University of Cambridge), Theodore Gouliouris(Cambridge University Hospitals NHS Foundation Trust), Ian Goodfellow(University of Cambridge), Effrossyni Gkrania‐Klotsas(Cambridge University Hospitals NHS Foundation Trust), Christopher J. R. Illingworth(University of Cambridge), Laura E. McCoy(University College London), Ravindra K. Gupta(University of Cambridge)
Nature
February 5, 2021
Cited by 1,081Open Access
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