Machine learning based early warning system enables accurate mortality risk prediction for COVID-19

Yue Gao(Tongji Hospital), Guangyao Cai(Tongji Hospital), Wei Fang(Wuhan University), Huayi Li(Tongji Hospital), Siyuan Wang(Tongji Hospital), Lingxi Chen(City University of Hong Kong), Yang Yu(Tongji Hospital), Dan Liu(Tongji Hospital), Sen Xu(Tongji Hospital), Pengfei Cui(Tongji Hospital), Shaoqing Zeng(Tongji Hospital), Xinxia Feng(Tongji Hospital), Ruidi Yu(Tongji Hospital), Ya Wang(Tongji Hospital), Yuan Yuan(Tongji Hospital), Xiaofei Jiao(Tongji Hospital), Jianhua Chi(Tongji Hospital), Jiahao Liu(Tongji Hospital), Ruyuan Li(Tongji Hospital), Zheng Xu(Tongji Hospital), Chunyan Song(Tongji Hospital), Ning Jin(Tongji Hospital), Wenjian Gong(Tongji Hospital), Xingyu Liu(Tongji Hospital), Lei Huang(Central Hospital of Wuhan), Xun Tian(Central Hospital of Wuhan), Lin Li(City University of Hong Kong), Hui Xing(Hubei University of Arts and Science), Ding Ma(Tongji Hospital), Chunrui Li(Tongji Hospital), Fei Ye(Tongji Hospital), Qinglei Gao(Tongji Hospital)
Nature Communications
October 6, 2020
Cited by 365Open Access
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Abstract

Soaring cases of coronavirus disease (COVID-19) are pummeling the global health system. Overwhelmed health facilities have endeavored to mitigate the pandemic, but mortality of COVID-19 continues to increase. Here, we present a mortality risk prediction model for COVID-19 (MRPMC) that uses patients' clinical data on admission to stratify patients by mortality risk, which enables prediction of physiological deterioration and death up to 20 days in advance. This ensemble model is built using four machine learning methods including Logistic Regression, Support Vector Machine, Gradient Boosted Decision Tree, and Neural Network. We validate MRPMC in an internal validation cohort and two external validation cohorts, where it achieves an AUC of 0.9621 (95% CI: 0.9464-0.9778), 0.9760 (0.9613-0.9906), and 0.9246 (0.8763-0.9729), respectively. This model enables expeditious and accurate mortality risk stratification of patients with COVID-19, and potentially facilitates more responsive health systems that are conducive to high risk COVID-19 patients.


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