New developments on the Encyclopedia of DNA Elements (ENCODE) data portal

Yunhai Luo(Stanford University), Benjamin C. Hitz(Stanford University), Idan Gabdank(Stanford University), Jason A. Hilton(Stanford University), Meenakshi S. Kagda(Stanford University), Bonita R. Lam(Stanford University), Zachary Myers(Stanford University), Paul Sud(Stanford University), Jennifer Jou(Stanford University), Khine Lin(Stanford University), Ulugbek K. Baymuradov(Stanford University), Keenan Graham(Stanford University), Casey Litton(Stanford University), Stuart R. Miyasato(Stanford University), J. Seth Strattan(Stanford University), Otto Jolanki(Stanford University), Jin-Wook Lee(Stanford University), Forrest Y. Tanaka(Stanford University), Philip Adenekan(Stanford University), Emma O’Neill(Stanford University), J. Michael Cherry(Stanford University)
Nucleic Acids Research
October 25, 2019
10.1093/nar/gkz1062
Cited by 1,096Open Access
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Abstract

The Encyclopedia of DNA Elements (ENCODE) is an ongoing collaborative research project aimed at identifying all the functional elements in the human and mouse genomes. Data generated by the ENCODE consortium are freely accessible at the ENCODE portal (https://www.encodeproject.org/), which is developed and maintained by the ENCODE Data Coordinating Center (DCC). Since the initial portal release in 2013, the ENCODE DCC has updated the portal to make ENCODE data more findable, accessible, interoperable and reusable. Here, we report on recent updates, including new ENCODE data and assays, ENCODE uniform data processing pipelines, new visualization tools, a dataset cart feature, unrestricted public access to ENCODE data on the cloud (Amazon Web Services open data registry, https://registry.opendata.aws/encode-project/) and more comprehensive tutorials and documentation.

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