NanoPack: visualizing and processing long-read sequencing data

Wouter De Coster(University of Antwerp), Svenn D’Hert(University of Antwerp), Darrin T. Schultz(University of California, Santa Cruz), Marc Cruts(University of Antwerp), Christine Van Broeckhoven(University of Antwerp)
Bioinformatics
March 12, 2018
10.1093/bioinformatics/bty149
Cited by 3,257Open Access
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Abstract

Summary: Here we describe NanoPack, a set of tools developed for visualization and processing of long-read sequencing data from Oxford Nanopore Technologies and Pacific Biosciences. Availability and implementation: The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with links to separate scripts and their documentation. The scripts are compatible with Linux, Mac OS and the MS Windows 10 subsystem for Linux and are available as a graphical user interface, a web service at http://nanoplot.bioinf.be and command line tools. Supplementary information: Supplementary data are available at Bioinformatics online.

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