The UCSC Cancer Genomics Browser: update 2015

Mary J. Goldman(University of California, Santa Cruz), Brian Craft(University of California, Santa Cruz), Teresa Swatloski(University of California, Santa Cruz), Melissa Cline(University of California, Santa Cruz), Olena Morozova(University of California, Santa Cruz), Mark Diekhans(University of California, Santa Cruz), David Haussler(Howard Hughes Medical Institute), Jingchun Zhu(University of California, Santa Cruz)
Nucleic Acids Research
November 11, 2014
10.1093/nar/gku1073
Cited by 405Open Access
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Abstract

The UCSC Cancer Genomics Browser (https://genome-cancer.ucsc.edu/) is a web-based application that integrates relevant data, analysis and visualization, allowing users to easily discover and share their research observations. Users can explore the relationship between genomic alterations and phenotypes by visualizing various -omic data alongside clinical and phenotypic features, such as age, subtype classifications and genomic biomarkers. The Cancer Genomics Browser currently hosts 575 public datasets from genome-wide analyses of over 227,000 samples, including datasets from TCGA, CCLE, Connectivity Map and TARGET. Users can download and upload clinical data, generate Kaplan-Meier plots dynamically, export data directly to Galaxy for analysis, plus generate URL bookmarks of specific views of the data to share with others.

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